Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3701

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3700: 12068 - K03020 RPC19, POLR1D DNA-directed RNA polymerases I and III subunit RPAC2, at 387944 to 388740 12068 mRNA_3701: 12069 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 389089 to 390202 12069 mRNA_3702: 12070 - HMMPfam-Inner centromere protein, ARK binding region-PF03941, at 390554 to 394764 12070

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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388,774 + 0.3
388,777 + 0.2
388,784 - -1.0
388,897 + -1.3
388,899 + 0.7
388,908 + -0.2
388,914 + -0.4
388,927 - 1.6
388,934 - 0.5
389,054 - 0.4
389,054 - -0.2
389,093 - 0.3
389,205 + 12069 mRNA_3701 0.10 0.2
389,223 + 12069 mRNA_3701 0.12 0.4
389,621 - 12069 mRNA_3701 0.48 -1.3
389,961 + 12069 mRNA_3701 0.78 -0.3
390,141 - -0.1
390,152 + -0.9
390,247 - -0.5
390,284 - -1.1
390,560 + -0.1