Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3602

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3601: 11969 - K11367 CHD1 chromodomain-helicase-DNA-binding protein 1, at 143237 to 148837 11969 mRNA_3602: 11970 - K10839 RAD23, HR23 UV excision repair protein RAD23, at 149343 to 150921 11970 mRNA_3603: 11971 - K13628 iscA, ISCA1 iron-sulfur cluster assembly protein, at 151130 to 151909 11971

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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148,704 - 0.3
148,707 + -1.4
148,850 - 0.0
148,854 - 0.3
148,986 + -0.2
149,011 - 0.3
149,019 + 0.6
149,105 + -0.1
149,127 - 0.7
149,275 + -0.7
149,289 - 0.8
149,297 - 0.1
149,609 - 11970 mRNA_3602 0.17 -0.2
149,910 + 11970 mRNA_3602 0.36 0.0
150,227 + 11970 mRNA_3602 0.56 0.8
150,472 + 11970 mRNA_3602 0.72 -1.1
150,621 - 11970 mRNA_3602 0.81 -0.2
150,738 + 11970 mRNA_3602 0.88 -0.0
150,759 + 11970 mRNA_3602 0.90 -0.3
150,900 - 0.3
150,928 - 0.9
150,937 - 0.1
150,938 + -0.2
150,942 + -0.4
151,050 + -0.7
151,052 + -0.6
151,058 + -1.1
151,083 - 0.1
151,094 + -0.2
151,110 + 2.9
151,111 - -0.2
151,118 + -1.4
151,118 - 0.4