Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3595

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3594: 11962 - K01555 FAH, fahA fumarylacetoacetase, at 127609 to 129068 11962 mRNA_3595: 11963 - K09838 ZEP, ABA1 zeaxanthin epoxidase, at 129467 to 131137 11963 mRNA_3596: 11964 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 131256 to 132687 11964

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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128,548 - 11962 mRNA_3594 0.64 -1.4
128,693 + 11962 mRNA_3594 0.74 0.8
129,007 + 1.1
129,304 - -0.4
129,856 - 11963 mRNA_3595 0.23 0.1
130,317 - 11963 mRNA_3595 0.51 -1.3
130,326 + 11963 mRNA_3595 0.51 0.2
130,453 - 11963 mRNA_3595 0.59 -0.0
130,462 + 11963 mRNA_3595 0.60 0.8
131,008 + 0.0
131,062 + 0.2
131,074 + -0.0
131,076 + -0.0
131,198 + 0.1
131,200 + 0.1
131,254 - -0.8
131,268 - 0.2
131,268 - 0.1
131,276 - 0.1
131,276 - 0.3
131,277 + -0.1
131,278 - -0.9
131,278 + -0.8
131,279 + -0.6
131,285 + 0.7
131,287 + -1.7
131,302 - 1.3
131,302 - -0.3
131,303 - 0.2
131,304 + 0.4
131,308 + -0.6
131,310 + 0.5
131,312 + -0.8
131,318 - -0.0
131,320 - 0.0
131,326 + 0.4
131,326 + -0.1
131,337 + -1.0
131,338 + -1.1
131,339 + -0.2
131,340 - 1.2
131,352 - 0.1
131,354 - 0.7
131,367 - -0.5
131,418 - 11964 mRNA_3596 0.11 0.5
131,425 - 11964 mRNA_3596 0.12 -0.6
131,449 - 11964 mRNA_3596 0.13 -0.4
131,467 - 11964 mRNA_3596 0.15 -0.2
131,492 + 11964 mRNA_3596 0.16 -0.6
131,607 + 11964 mRNA_3596 0.25 0.5
131,608 + 11964 mRNA_3596 0.25 -0.2
131,654 + 11964 mRNA_3596 0.28 -0.1
131,877 + 11964 mRNA_3596 0.43 -0.7
131,921 - 11964 mRNA_3596 0.46 -0.8