Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3541

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3540: 11908 - K00784 rnz ribonuclease Z, at 6477 to 8169 11908 mRNA_3541: 11909 - K01754 E4.3.1.19, ilvA, tdcB threonine dehydratase, at 8355 to 10759 11909 mRNA_3542: 11910 - K01597 MVD, mvaD diphosphomevalonate decarboxylase, at 11016 to 12700 11910

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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7,439 + 11908 mRNA_3540 0.57 0.1
7,439 + 11908 mRNA_3540 0.57 0.4
7,441 - 11908 mRNA_3540 0.57 -0.3
7,682 - 11908 mRNA_3540 0.71 -0.9
7,740 - 11908 mRNA_3540 0.75 0.7
7,778 + 11908 mRNA_3540 0.77 -1.3
7,983 + 11908 mRNA_3540 0.89 0.7
8,056 + 0.2
8,120 + -0.6
8,123 - 0.2
8,179 - -1.8
8,311 - -1.4
8,312 + -1.5
8,313 - -0.0
8,336 + 1.6
8,340 + 0.3
9,182 - 11909 mRNA_3541 0.34 0.2
10,758 - -0.5
10,831 + -1.7