Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3481

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3480: 11848 - K02180 BUB3 cell cycle arrest protein BUB3, at 209543 to 211018 11848 mRNA_3481: 11849 - K01752 E4.3.1.17, sdaA, sdaB, tdcG L-serine dehydratase, at 211233 to 213567 11849 mRNA_3482: 11850 - K03861 PIGP, GPI19, DSCR5 phosphatidylinositol glycan, class P, at 213922 to 215101 11850

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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211,104 - 0.6
211,112 - -0.5
211,358 + 0.4
211,574 + 11849 mRNA_3481 0.15 1.3
211,802 - 11849 mRNA_3481 0.24 -1.0
211,811 - 11849 mRNA_3481 0.25 -1.2
211,835 + 11849 mRNA_3481 0.26 -1.7
211,841 + 11849 mRNA_3481 0.26 0.5
211,863 + 11849 mRNA_3481 0.27 1.3
211,881 + 11849 mRNA_3481 0.28 -0.5
212,279 - 11849 mRNA_3481 0.45 2.2
212,545 - 11849 mRNA_3481 0.56 -0.7
212,700 - 11849 mRNA_3481 0.63 0.3
212,842 - 11849 mRNA_3481 0.69 -0.2
212,899 + 11849 mRNA_3481 0.71 -0.9
212,905 + 11849 mRNA_3481 0.72 -0.6
212,965 - 11849 mRNA_3481 0.74 -1.2
212,974 - 11849 mRNA_3481 0.75 -0.1
212,982 + 11849 mRNA_3481 0.75 1.0
213,165 + 11849 mRNA_3481 0.83 1.7
213,474 + 0.2
213,487 + -0.5
213,607 - -0.0
213,613 + -1.6
213,742 + -0.2
213,752 - -0.2
213,757 - -1.1
213,758 - 0.4
213,765 - 0.7
213,783 + 0.1
213,816 + -0.0
213,837 + 0.1
213,872 - -0.9
213,895 - 0.4
213,959 - 0.6
214,083 + 11850 mRNA_3482 0.14 -0.5