Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3450

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3449: 11817 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 126631 to 128651 11817 mRNA_3450: 11818 - K20131 RABGEF1 Rab5 GDP/GTP exchange factor, at 129414 to 132360 11818 mRNA_3451: 11819 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 132983 to 136040 11819

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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128,709 - 0.9
128,735 - 0.0
128,746 + -0.0
128,748 - -0.8
128,870 + 0.8
128,887 - 0.8
128,898 - 0.3
128,905 - 0.9
128,977 - -1.9
129,190 + -0.2
129,223 - 0.6
129,231 - 1.4
129,513 - -1.3
129,788 + 11818 mRNA_3450 0.13 -0.1
129,790 + 11818 mRNA_3450 0.13 -0.5
129,808 + 11818 mRNA_3450 0.13 1.1
129,818 + 11818 mRNA_3450 0.14 0.1
130,955 - 11818 mRNA_3450 0.52 0.5
130,969 + 11818 mRNA_3450 0.53 0.0
132,130 + -0.0
132,275 - -1.2
132,304 + -0.6
132,411 + 0.3
132,434 + -0.7
132,571 - 0.6
132,571 - -1.1
132,578 + 0.6
132,587 - -0.6
132,712 - 0.6
132,735 - 1.2
132,869 - -0.1
132,874 + -0.2
132,879 + -0.2
132,889 - -0.9
133,039 + -0.1
133,041 + 1.4
133,042 - 0.0