Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3445

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3444: 11812 - Hypothetical Protein, at 118476 to 119519 11812 mRNA_3445: 11813 - HMMPfam-BRO1-like domain-PF03097,ProSiteProfiles-BRO1 domain profile.-PS51180,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SMART-BRO1-like domain-SM01041, at 120363 to 121884 11813 mRNA_3446: 11814 - K07393 ECM4 putative glutathione S-transferase, at 122538 to 123846 11814

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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119,578 - -0.4
119,579 + -1.0
119,601 + -0.4
119,736 + 0.2
119,904 - -0.1
120,034 - 0.9
120,892 + 11813 mRNA_3445 0.35 -0.1
120,934 - 11813 mRNA_3445 0.38 -0.9
121,217 - 11813 mRNA_3445 0.56 0.6
121,632 + 11813 mRNA_3445 0.83 -0.7
121,634 - 11813 mRNA_3445 0.84 -0.3
121,636 - 11813 mRNA_3445 0.84 0.4
122,049 - -2.6
122,071 - -0.3
122,231 - 0.6
122,238 + -0.7
122,238 - -0.3
122,238 - -0.7
122,239 + 1.4
122,240 + -0.9
122,245 + -0.6
122,381 - 0.3
122,514 + -0.5
122,526 + -1.3
122,669 - 11814 mRNA_3446 0.10 0.4
122,861 - 11814 mRNA_3446 0.25 -0.9