Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3419

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50010 to 53314 11787 mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53705 to 57912 11788

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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49,097 - 1.3
49,103 + 1.6
49,180 + 1.0
49,194 - 0.2
49,195 + -0.1
49,214 + -0.2
49,325 - 0.8
49,349 - 0.4
49,371 + -0.6
49,372 + 0.5
49,376 - 0.0
49,376 - -0.3
49,378 - -0.1
49,378 - 0.6
49,379 - 1.7
49,384 + 0.2
49,387 + -0.1
49,393 - -0.1
49,396 - -0.3
49,398 + 0.7
49,400 + 0.6
49,402 + 0.0
49,406 + -0.1
49,407 + -0.5
49,409 + -0.8
49,409 + -0.2
49,420 - 0.2
49,472 - -0.1
49,496 - -0.8
49,503 - 0.3
49,505 + 0.3
49,505 + -0.3
49,508 - -0.4
49,524 + 0.3
49,527 + -0.1
49,532 - -0.1
49,534 - -0.2
49,574 + -1.0
49,582 + 0.7
49,605 + 0.2
49,610 + 0.3
49,626 - 0.1
49,626 - 0.6
49,627 - -0.2
49,627 - 1.2
49,629 + -0.3
49,638 - 0.1
49,644 + -0.0
49,663 + 0.4
49,736 - 0.7
49,754 - 0.8
49,766 - -0.6
49,776 + -0.1
49,777 - 0.0
49,784 - 0.6
49,803 - -0.2
49,926 + -1.0
49,933 + 1.6
49,935 - -0.6
49,943 + 0.0
50,075 - -1.2
50,081 - -1.3
50,084 + -1.6
50,089 + 0.7
50,116 + -1.7
50,240 + 0.9
50,240 - -1.8
50,241 + -0.5
50,247 + -1.2
50,269 - 0.9
50,273 - 1.2
50,417 + 11787 mRNA_3419 0.12 -1.1
50,555 + 11787 mRNA_3419 0.16 -0.9
50,701 + 11787 mRNA_3419 0.21 -0.7
50,973 + 11787 mRNA_3419 0.29 -1.5
50,982 - 11787 mRNA_3419 0.29 -2.5
51,462 - 11787 mRNA_3419 0.44 -3.2
52,264 - 11787 mRNA_3419 0.68 -4.0
52,421 - 11787 mRNA_3419 0.73 -1.7
52,581 - 11787 mRNA_3419 0.78 0.1
52,610 - 11787 mRNA_3419 0.79 -0.9
52,981 - 11787 mRNA_3419 0.90 0.5
53,417 - 0.5
53,602 - 0.1
53,604 - 0.4
53,609 + 0.9
53,615 - 0.5
53,615 - -0.1
53,616 - 0.9
53,624 + 0.2