Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3406

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3405: 11773 - K17922 SNX8, MVP1 sorting nexin-8, at 10068 to 11831 11773 mRNA_3406: 11774 - Hypothetical Protein, at 12464 to 13384 11774 mRNA_3407: 11775 - KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain, at 13609 to 17494 11775

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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11,866 + -1.6
12,019 - 0.5
12,034 - -1.0
12,065 - 0.1
12,274 - -0.5
12,305 + -0.3
12,316 - 0.1
12,334 - -0.7
12,341 - -1.6
12,391 + -0.0
12,447 - 0.3
12,453 - -1.3
12,469 - -0.2
12,471 - 0.4
12,473 - -0.5
12,484 - -0.1
12,488 + -0.2
12,503 + 0.4
12,508 + -0.2
12,517 + -0.2
12,519 + -0.3
12,648 + 11774 mRNA_3406 0.20 0.8
12,661 + 11774 mRNA_3406 0.21 -0.7
12,772 - 11774 mRNA_3406 0.33 -0.3
12,778 + 11774 mRNA_3406 0.34 -0.1
12,779 - 11774 mRNA_3406 0.34 0.3
12,799 + 11774 mRNA_3406 0.36 0.3
12,803 - 11774 mRNA_3406 0.37 1.4
12,805 - 11774 mRNA_3406 0.37 -0.5
12,817 - 11774 mRNA_3406 0.38 0.2
12,821 + 11774 mRNA_3406 0.39 0.2
12,821 - 11774 mRNA_3406 0.39 -0.9
12,827 + 11774 mRNA_3406 0.39 -0.3
12,936 - 11774 mRNA_3406 0.51 -0.6
12,936 - 11774 mRNA_3406 0.51 0.0
12,949 + 11774 mRNA_3406 0.53 0.5
12,957 + 11774 mRNA_3406 0.54 1.4
12,964 - 11774 mRNA_3406 0.54 0.1
12,964 + 11774 mRNA_3406 0.54 -2.5
12,971 - 11774 mRNA_3406 0.55 0.4
12,973 - 11774 mRNA_3406 0.55 -1.9
12,976 - 11774 mRNA_3406 0.56 -0.7
13,100 - 11774 mRNA_3406 0.69 0.7
13,114 - 11774 mRNA_3406 0.71 -0.6
13,119 - 11774 mRNA_3406 0.71 0.8
13,122 - 11774 mRNA_3406 0.71 -0.3
13,130 + 11774 mRNA_3406 0.72 -0.3
13,136 - 11774 mRNA_3406 0.73 0.0
13,225 - 11774 mRNA_3406 0.83 -0.0
13,242 - 11774 mRNA_3406 0.84 -0.1
13,273 + 11774 mRNA_3406 0.88 -0.5
13,286 - 11774 mRNA_3406 0.89 0.5
13,300 + 0.3
13,318 - -0.5
13,343 + -1.1
13,348 - -1.0
13,348 - -1.6
13,381 - -1.4
13,386 + -0.6
13,389 - -2.2
13,399 - -0.9
13,401 - -0.2
13,415 - -0.3
13,415 + -0.1
13,418 + 0.3
13,427 + -0.1
13,445 - -0.8
13,455 - -2.6
13,466 - -1.6
13,536 - -1.4
13,583 - -1.1
13,750 + 1.6
14,003 - 11775 mRNA_3407 0.10 -0.1
14,040 - 11775 mRNA_3407 0.11 -0.1