Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3396

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3395: 11763 - K07566 tsaC, rimN, SUA5 L-threonylcarbamoyladenylate synthase, at 575450 to 577006 11763 mRNA_3396: 11764 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 577569 to 578953 11764 mRNA_3397: 11765 - K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+), at 579279 to 580457 11765

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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577,149 + -2.3
577,284 - -0.6
577,292 + 0.3
577,293 + 0.2
577,423 - 1.4
577,714 - 11764 mRNA_3396 0.10 0.3
577,715 + 11764 mRNA_3396 0.11 0.6
577,916 + 11764 mRNA_3396 0.25 0.1
577,977 + 11764 mRNA_3396 0.29 0.1
577,993 - 11764 mRNA_3396 0.31 0.1
578,038 + 11764 mRNA_3396 0.34 -0.1
578,149 + 11764 mRNA_3396 0.42 -1.1
578,184 + 11764 mRNA_3396 0.44 -0.0
578,282 + 11764 mRNA_3396 0.51 0.1
578,323 - 11764 mRNA_3396 0.54 1.0
578,414 + 11764 mRNA_3396 0.61 -0.5
578,724 + 11764 mRNA_3396 0.83 -0.6
578,845 - 0.4
578,848 + 1.1
578,877 + -0.7
579,131 + 0.0
579,137 - -0.4
579,148 - -0.3
579,181 + 0.1
579,214 + 0.4
579,239 + 0.1
579,311 - 0.5
579,442 - 11765 mRNA_3397 0.14 -2.4
579,446 + 11765 mRNA_3397 0.14 -0.9
579,639 + 11765 mRNA_3397 0.31 1.2
579,655 - 11765 mRNA_3397 0.32 0.7
579,739 - 11765 mRNA_3397 0.39 -0.1
579,748 + 11765 mRNA_3397 0.40 1.9
579,776 - 11765 mRNA_3397 0.42 0.7
579,878 - 11765 mRNA_3397 0.51 1.1
579,923 - 11765 mRNA_3397 0.55 0.2
579,923 + 11765 mRNA_3397 0.55 -0.2
579,924 - 11765 mRNA_3397 0.55 -1.0