Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3385

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3385: 11753 - HMMPfam-Gamma interferon inducible lysosomal thiol reductase (GILT)-PF03227, at 554455 to 555770 11753 mRNA_3386: 11754 - K05756 ARPC3 actin related protein 2/3 complex, subunit 3, at 556119 to 557419 11754

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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553,560 + 0.2
554,046 + 0.1
554,060 + -0.2
554,186 + 0.4
554,333 + 0.7
554,339 - 0.0
554,345 - -1.9
554,345 + 1.1
554,346 + -0.2
554,347 + -0.3
554,351 - 0.3
554,361 + 0.1
554,362 + 0.9
554,369 - 0.4
554,389 - -0.2
554,390 + 0.3
554,400 - 0.4
554,632 - 11753 mRNA_3385 0.13 0.0
554,644 + 11753 mRNA_3385 0.14 0.4
554,673 - 11753 mRNA_3385 0.17 -1.2
554,789 - 11753 mRNA_3385 0.25 -0.1
554,793 - 11753 mRNA_3385 0.26 -0.1
554,938 + 11753 mRNA_3385 0.37 -0.2
554,941 - 11753 mRNA_3385 0.37 0.4
555,086 + 11753 mRNA_3385 0.48 1.8
555,302 - 11753 mRNA_3385 0.64 -0.9
555,385 + 11753 mRNA_3385 0.71 -0.7
555,632 + 11753 mRNA_3385 0.89 -0.6
555,812 + -0.5
555,813 - 0.2
555,958 - -1.1
555,965 + -0.1
555,967 + 0.4
555,975 + -0.5
555,976 - 0.5
555,989 + 0.4
556,011 - -0.8