Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3375

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3374: 11742 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 525330 to 527850 11742 mRNA_3375: 11743 - Hypothetical Protein, at 528388 to 528831 11743 mRNA_3376: 11744 - K12864 CTNNBL1 beta-catenin-like protein 1, at 528897 to 531251 11744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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527,475 - 11742 mRNA_3374 0.85 0.3
527,483 - 11742 mRNA_3374 0.85 -0.4
527,486 + 11742 mRNA_3374 0.86 -0.8
527,776 - -2.3
527,799 - -1.1
527,810 - 1.6
527,922 + 0.1
527,997 + -1.1
528,021 - -0.3
528,022 - 0.5
528,038 + 0.8
528,061 + 0.5
528,071 - 0.5
528,091 + 0.2
528,091 - -0.4
528,182 - -0.3
528,236 + -0.7
528,359 - 0.5
528,401 + 0.5
528,486 - 11743 mRNA_3375 0.22 -0.3
528,667 + 11743 mRNA_3375 0.63 0.9
528,845 + 0.2
528,846 + -0.3
529,000 + 0.5
529,055 - -0.7
529,187 - 11744 mRNA_3376 0.12 -0.6
529,243 + 11744 mRNA_3376 0.15 0.5
529,265 - 11744 mRNA_3376 0.16 0.7
529,386 + 11744 mRNA_3376 0.21 -0.2
529,556 - 11744 mRNA_3376 0.28 -0.2
529,789 - 11744 mRNA_3376 0.38 0.5
529,808 - 11744 mRNA_3376 0.39 -0.0