Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3316

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3315: 11683 - K18637 AXL2 axial budding pattern protein 2, at 375335 to 379207 11683 mRNA_3316: 11684 - K15223 UAF30, SPP27 upstream activation factor subunit UAF30, at 379574 to 381154 11684 mRNA_3317: 11685 - SUPERFAMILY--SSF52540, at 381412 to 382785 11685

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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378,924 - -1.1
379,125 - 0.6
379,190 + 1.1
379,207 + -1.1
379,230 - 0.0
379,334 - 0.4
379,361 - 0.2
379,366 - 1.2
379,371 - 0.2
379,375 + -0.6
379,487 - -1.4
379,511 - 0.2
379,512 + 1.2
379,524 + -0.4
379,529 - -0.1
379,536 - 1.4
379,712 + 0.3
379,827 + 11684 mRNA_3316 0.16 0.4
379,828 - 11684 mRNA_3316 0.16 1.1
379,846 - 11684 mRNA_3316 0.17 1.3
379,936 + 11684 mRNA_3316 0.23 0.4
380,118 - 11684 mRNA_3316 0.34 -0.2
380,229 - 11684 mRNA_3316 0.41 -0.7
380,229 - 11684 mRNA_3316 0.41 0.1
380,229 - 11684 mRNA_3316 0.41 -0.2
380,280 + 11684 mRNA_3316 0.45 -0.6
380,581 + 11684 mRNA_3316 0.64 1.0
380,669 - 11684 mRNA_3316 0.69 -1.0
380,839 + 11684 mRNA_3316 0.80 0.4
380,840 - 11684 mRNA_3316 0.80 1.4
380,871 - 11684 mRNA_3316 0.82 -0.3
381,127 - 0.5
381,403 + 0.4
381,760 + 11685 mRNA_3317 0.25 -0.1
381,860 + 11685 mRNA_3317 0.33 -0.4
381,872 + 11685 mRNA_3317 0.33 -0.1
382,024 - 11685 mRNA_3317 0.45 -0.4
382,024 + 11685 mRNA_3317 0.45 0.5