Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3291

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3290: 11658 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 304969 to 308540 11658 mRNA_3291: 11659 - BLAST expressed protein [Schizophyllum commune H4-8], at 308905 to 310428 11659 mRNA_3292: 11660 - KOG1339 Aspartyl protease, at 311013 to 311790 11660

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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308,350 - -0.3
308,466 + -1.0
308,761 + 0.9
308,762 - -0.6
309,046 - -0.8
309,214 + 11659 mRNA_3291 0.20 0.8
309,254 - 11659 mRNA_3291 0.23 1.5
309,540 + 11659 mRNA_3291 0.42 -0.1
309,843 + 11659 mRNA_3291 0.62 -0.5
310,115 + 11659 mRNA_3291 0.79 -0.1
310,116 + 11659 mRNA_3291 0.79 0.0
310,273 - 11659 mRNA_3291 0.90 -0.1
310,292 - 0.5
310,569 - 0.9
310,578 - -0.3
310,594 - -0.9
310,598 - -0.4
310,629 + 0.6
310,629 - 0.1
310,652 - 0.8
310,654 - -0.3
310,655 + 0.3
310,669 - -0.3
310,677 - 0.0
310,706 - -0.6
310,710 - 0.5
310,710 - -0.3
310,748 + -0.9
310,991 - 0.8
311,141 + 11660 mRNA_3292 0.16 -0.2
311,291 - 11660 mRNA_3292 0.36 0.5
311,294 - 11660 mRNA_3292 0.36 0.3
311,300 + 11660 mRNA_3292 0.37 1.0
311,405 - 11660 mRNA_3292 0.50 0.2