Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3274

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3273: 11641 - K13754 SLC24A6, NCKX6 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6, at 259466 to 262865 11641 mRNA_3274: 11642 - K00108 betA, CHDH choline dehydrogenase, at 263216 to 265708 11642 mRNA_3275: 11643 - BLAST methyltransferase [Obba rivulosa], at 265766 to 267917 11643

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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262,716 - 0.1
262,821 - 1.5
262,834 + -0.9
262,847 - 0.1
262,852 + 0.1
262,852 + 0.2
262,894 - -0.1
262,962 + -1.6
262,964 - -0.4
262,990 + 0.4
263,032 + -1.5
263,040 - 2.2
263,049 + 0.3
263,054 - 0.0
263,131 + 0.1
263,261 + -0.4
263,261 + -0.1
263,541 + 11642 mRNA_3274 0.13 0.2
263,861 + 11642 mRNA_3274 0.26 0.6
264,150 + 11642 mRNA_3274 0.37 -0.2
264,225 - 11642 mRNA_3274 0.40 0.5
264,412 - 11642 mRNA_3274 0.48 0.9
264,547 - 11642 mRNA_3274 0.53 -0.8
264,682 - 11642 mRNA_3274 0.59 1.2
264,861 - 11642 mRNA_3274 0.66 0.1
264,899 - 11642 mRNA_3274 0.68 0.8
264,950 - 11642 mRNA_3274 0.70 -0.1
265,311 - 11642 mRNA_3274 0.84 0.5
265,430 + 11642 mRNA_3274 0.89 -0.0
265,455 - 11642 mRNA_3274 0.90 -0.0
265,468 + -0.3
265,536 + -0.1
265,537 - 0.3
265,549 + 0.3
265,549 + 0.6
265,649 - 0.3
265,655 - -0.3
265,658 + -2.0
265,658 + 0.4
265,666 - -0.6
265,685 - 0.7
265,689 + -0.0
265,700 - -0.3
265,705 + 0.7
265,786 - 0.2
265,818 + 1.1
265,821 + 1.3
265,824 - -0.3
265,826 + 0.2
265,827 + -0.3
265,828 + 1.4
265,835 + 0.3
265,835 + -1.0
265,836 - 0.6
265,839 - -0.6
265,839 - -1.6
265,841 + 0.2
265,845 + -2.1
265,852 + 0.7
265,853 - 0.3
265,853 - 1.1
265,855 - 0.8
265,856 + 0.4
265,856 + 0.5
265,856 - 1.4
265,866 + -0.7
265,867 + 0.1
265,868 - 0.2
265,871 - 0.0
265,872 - -1.3
265,873 + -0.2
265,874 - 0.7
265,874 + 1.0
265,875 - -0.3
265,876 - 1.0
265,878 - 1.7
265,879 - 0.9
265,881 - -0.2
265,882 - 0.6
265,883 + -0.3
265,883 + 0.7
265,889 - -1.4
265,889 - 0.0
265,892 + 0.9
265,893 + -0.0
265,893 - 0.0
265,898 - 0.3
265,899 - 0.4
265,899 + 0.3
265,901 + -0.0
265,902 + 0.3
265,907 - -0.3
265,907 - 1.1
265,910 - 0.4
265,934 - -0.2
265,947 - -0.6
265,949 - 0.1
265,949 - 0.0
265,952 - -0.8
265,952 - -0.6
265,955 + -0.3
265,956 + -0.1
265,956 + 0.3
265,969 + 0.8
265,969 + 1.5
265,983 - 11643 mRNA_3275 0.10 0.2
265,988 + 11643 mRNA_3275 0.10 2.4
265,995 + 11643 mRNA_3275 0.11 1.0
266,013 - 11643 mRNA_3275 0.11 -0.3
266,027 - 11643 mRNA_3275 0.12 1.0
266,051 - 11643 mRNA_3275 0.13 0.8
266,053 - 11643 mRNA_3275 0.13 1.1
266,062 - 11643 mRNA_3275 0.14 -0.3
266,156 + 11643 mRNA_3275 0.18 0.3
266,164 - 11643 mRNA_3275 0.18 -0.3
266,171 + 11643 mRNA_3275 0.19 -0.1
266,174 - 11643 mRNA_3275 0.19 -0.9
266,201 - 11643 mRNA_3275 0.20 -0.9
266,209 - 11643 mRNA_3275 0.21 1.0
266,226 - 11643 mRNA_3275 0.21 0.0
266,341 - 11643 mRNA_3275 0.27 -0.1
266,638 + 11643 mRNA_3275 0.41 -0.5