Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3273

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3272: 11640 - Hypothetical Protein, at 257343 to 259236 11640 mRNA_3273: 11641 - K13754 SLC24A6, NCKX6 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6, at 259466 to 262865 11641 mRNA_3274: 11642 - K00108 betA, CHDH choline dehydrogenase, at 263216 to 265708 11642

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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259,277 - 0.2
259,306 - 0.3
259,417 - 0.1
259,422 - 0.6
259,425 + -0.7
259,431 - -1.5
259,432 - 0.0
259,434 - -0.0
259,441 - 0.5
259,478 + 1.1
259,612 - 0.3
259,752 - -0.0
259,874 - 11641 mRNA_3273 0.12 0.1
259,898 + 11641 mRNA_3273 0.13 -0.2
260,052 + 11641 mRNA_3273 0.17 -0.6
260,479 - 11641 mRNA_3273 0.30 0.8
260,908 + 11641 mRNA_3273 0.42 -0.1
261,065 - 11641 mRNA_3273 0.47 -0.4
261,100 - 11641 mRNA_3273 0.48 1.5
261,653 - 11641 mRNA_3273 0.64 0.5
261,658 + 11641 mRNA_3273 0.64 -0.1
261,744 + 11641 mRNA_3273 0.67 -1.3
261,748 + 11641 mRNA_3273 0.67 0.3
261,775 + 11641 mRNA_3273 0.68 0.3
261,794 - 11641 mRNA_3273 0.68 0.3
261,830 + 11641 mRNA_3273 0.70 1.3
261,987 - 11641 mRNA_3273 0.74 -0.3
262,081 - 11641 mRNA_3273 0.77 1.5
262,082 + 11641 mRNA_3273 0.77 1.6
262,083 + 11641 mRNA_3273 0.77 0.9
262,716 - 0.1
262,821 - 1.5
262,834 + -0.9
262,847 - 0.1
262,852 + 0.1
262,852 + 0.2
262,894 - -0.1
262,962 + -1.6
262,964 - -0.4
262,990 + 0.4
263,032 + -1.5
263,040 - 2.2
263,049 + 0.3
263,054 - 0.0
263,131 + 0.1
263,261 + -0.4
263,261 + -0.1
263,541 + 11642 mRNA_3274 0.13 0.2
263,861 + 11642 mRNA_3274 0.26 0.6