Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3253

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3252: 11620 - KOG3348 BolA (bacterial stress-induced morphogen)-related protein, at 217348 to 218013 11620 mRNA_3253: 11621 - KOG1201 Hydroxysteroid 17-beta dehydrogenase 11, at 218422 to 220105 11621 mRNA_3254: 11622 - K12161 URM1 ubiquitin related modifier 1, at 220282 to 220812 11622

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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217,516 - 11620 mRNA_3252 0.25 -1.1
217,530 + 11620 mRNA_3252 0.27 1.4
217,534 - 11620 mRNA_3252 0.28 -0.6
217,570 - 11620 mRNA_3252 0.33 1.0
217,867 - 11620 mRNA_3252 0.78 -0.2
217,869 + 11620 mRNA_3252 0.78 -1.0
217,881 + 11620 mRNA_3252 0.80 -0.9
217,939 - 11620 mRNA_3252 0.89 1.2
218,014 + -1.3
218,017 + -0.1
218,136 - 0.1
218,164 + -0.3
218,166 + 1.4
218,183 + -0.1
218,324 - -0.7
218,330 - 0.9
218,340 + 1.7
218,344 - 0.8
218,345 - 0.1
218,346 - -0.2
218,350 + -0.5
218,359 + 0.4
218,361 + -0.4
218,363 - -0.4
218,523 + -0.5
218,661 + 11621 mRNA_3253 0.14 -1.0
218,802 - 11621 mRNA_3253 0.23 -0.2
218,811 - 11621 mRNA_3253 0.23 0.6
218,821 + 11621 mRNA_3253 0.24 0.2
218,965 - 11621 mRNA_3253 0.32 -0.1
218,969 + 11621 mRNA_3253 0.32 1.6
219,111 + 11621 mRNA_3253 0.41 -1.1
219,221 - 11621 mRNA_3253 0.47 -0.6
219,378 - 11621 mRNA_3253 0.57 0.3
219,662 - 11621 mRNA_3253 0.74 -0.1
219,840 - 11621 mRNA_3253 0.84 -0.8
219,997 + 0.8
220,124 + 0.8
220,728 + 11622 mRNA_3254 0.84 -2.9
220,855 + -0.4
220,874 - -0.2
220,883 - -0.8
220,892 + 0.3
220,981 - 0.3
221,012 - 0.6
221,024 - 0.9
221,027 - 0.3