Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3230

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3229: 11597 - K01113 phoD alkaline phosphatase D, at 152510 to 154539 11597 mRNA_3230: 11598 - HMMPfam-Region of unknown function (DUF2417)-PF10329, at 155480 to 157759 11598 mRNA_3231: 11599 - KOG1430 C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases, at 157802 to 159637 11599

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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154,487 - 0.4
154,897 - 0.1
154,921 - -0.3
154,927 - 3.1
155,030 - -1.6
155,044 - 1.5
155,076 + 0.3
155,192 - -0.5
155,211 + -0.3
155,214 + 0.2
155,336 - 0.0
155,344 - -2.3
155,348 - -0.4
155,350 - -0.1
155,350 + -0.5
155,352 - -0.0
155,356 + 0.4
155,363 - 0.2
155,368 - 0.5
155,370 - 1.5
155,371 - -0.6
155,373 + 1.2
155,375 - 1.0
155,376 + -0.3
155,378 + 1.7
155,378 + -0.3
155,383 + 0.3
155,419 - 1.0
155,543 - 0.6
155,553 - 0.0
155,942 + 11598 mRNA_3230 0.20 -1.0
155,979 + 11598 mRNA_3230 0.22 -2.7
156,136 + 11598 mRNA_3230 0.29 -0.3
156,139 - 11598 mRNA_3230 0.29 -0.3
156,421 - 11598 mRNA_3230 0.41 0.9
156,560 - 11598 mRNA_3230 0.47 1.4
156,566 - 11598 mRNA_3230 0.48 -1.3
156,602 + 11598 mRNA_3230 0.49 0.2
156,711 + 11598 mRNA_3230 0.54 0.6
157,016 + 11598 mRNA_3230 0.67 -0.8
157,148 - 11598 mRNA_3230 0.73 1.2
157,158 - 11598 mRNA_3230 0.74 -0.2
157,302 - 11598 mRNA_3230 0.80 1.0
157,320 + 11598 mRNA_3230 0.81 -1.4
157,324 - 11598 mRNA_3230 0.81 -0.1
157,453 - 11598 mRNA_3230 0.87 0.7
157,461 - 11598 mRNA_3230 0.87 -0.2
157,468 + 11598 mRNA_3230 0.87 0.1
157,617 - 0.9
157,627 + 0.9
157,629 - -0.1
157,665 - 0.6
157,672 + 0.2
157,676 + -0.3
157,679 + 0.2
157,710 - -0.3
157,923 - -0.2
158,269 + 11599 mRNA_3231 0.25 0.4
158,379 + 11599 mRNA_3231 0.31 0.2
158,724 + 11599 mRNA_3231 0.50 0.6