Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3229

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3228: 11596 - Hypothetical Protein, at 150554 to 152280 11596 mRNA_3229: 11597 - K01113 phoD alkaline phosphatase D, at 152510 to 154539 11597 mRNA_3230: 11598 - HMMPfam-Region of unknown function (DUF2417)-PF10329, at 155480 to 157759 11598

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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151,523 + 11596 mRNA_3228 0.56 -0.6
151,598 + 11596 mRNA_3228 0.60 -0.4
151,667 + 11596 mRNA_3228 0.64 -0.4
151,694 - 11596 mRNA_3228 0.66 -1.5
151,708 - 11596 mRNA_3228 0.67 -0.1
151,708 - 11596 mRNA_3228 0.67 1.7
151,708 - 11596 mRNA_3228 0.67 0.9
151,708 + 11596 mRNA_3228 0.67 0.7
151,709 + 11596 mRNA_3228 0.67 1.6
151,709 - 11596 mRNA_3228 0.67 -0.5
151,709 - 11596 mRNA_3228 0.67 0.5
151,713 + 11596 mRNA_3228 0.67 0.2
151,765 + 11596 mRNA_3228 0.70 0.1
151,849 + 11596 mRNA_3228 0.75 0.3
152,208 + 1.1
152,295 - 0.5
152,299 - 0.2
152,321 - -1.9
152,344 + 0.1
152,557 + 0.6
152,591 + -0.1
152,600 + -0.7
152,679 - -0.0
152,720 - 11597 mRNA_3229 0.10 0.3
152,993 - 11597 mRNA_3229 0.24 -0.4
153,047 - 11597 mRNA_3229 0.26 0.2
153,166 - 11597 mRNA_3229 0.32 -0.0
153,179 + 11597 mRNA_3229 0.33 -0.2
153,385 + 11597 mRNA_3229 0.43 0.2
153,593 + 11597 mRNA_3229 0.53 -0.2
153,881 - 11597 mRNA_3229 0.68 0.6
153,912 + 11597 mRNA_3229 0.69 0.5
154,487 - 0.4
154,897 - 0.1
154,921 - -0.3
154,927 - 3.1
155,030 - -1.6
155,044 - 1.5
155,076 + 0.3
155,192 - -0.5
155,211 + -0.3
155,214 + 0.2
155,336 - 0.0
155,344 - -2.3
155,348 - -0.4
155,350 - -0.1
155,350 + -0.5
155,352 - -0.0
155,356 + 0.4
155,363 - 0.2
155,368 - 0.5
155,370 - 1.5
155,371 - -0.6
155,373 + 1.2
155,375 - 1.0
155,376 + -0.3
155,378 + 1.7
155,378 + -0.3
155,383 + 0.3
155,419 - 1.0