Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3196

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3195: 11563 - Hypothetical Protein, at 60623 to 61680 11563 mRNA_3196: 11564 - Hypothetical Protein, at 62107 to 63896 11564 mRNA_3197: 11565 - BLAST similar to An12g07160 [Aspergillus kawachii IFO 4308], at 64392 to 66116 11565

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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61,206 + 11563 mRNA_3195 0.55 0.7
61,392 - 11563 mRNA_3195 0.73 -0.2
61,512 - 11563 mRNA_3195 0.84 0.9
61,627 + -0.4
61,676 + -0.2
61,684 + 0.7
61,707 + 0.3
61,710 - 0.2
61,786 - 0.4
61,796 + 1.0
61,796 - 0.5
61,807 + -0.4
61,825 + 0.2
61,835 - 0.5
61,932 - 0.8
61,958 + 0.9
62,347 - 11564 mRNA_3196 0.13 0.3
62,404 - 11564 mRNA_3196 0.17 0.5
62,497 - 11564 mRNA_3196 0.22 0.4
62,505 + 11564 mRNA_3196 0.22 -0.7
62,597 + 11564 mRNA_3196 0.27 0.7
62,787 - 11564 mRNA_3196 0.38 0.4
62,803 + 11564 mRNA_3196 0.39 2.1
63,067 + 11564 mRNA_3196 0.54 -1.1
63,395 - 11564 mRNA_3196 0.72 0.1
63,417 + 11564 mRNA_3196 0.73 1.0
63,428 + 11564 mRNA_3196 0.74 1.3
63,435 - 11564 mRNA_3196 0.74 -0.4
63,974 - -0.7
63,975 - 0.6
63,982 - 1.0
63,983 + 0.8
64,042 - -0.6
64,044 - 0.8
64,116 - 1.6
64,118 - -0.2
64,124 + 1.2
64,172 + 0.3
64,178 - -0.1
64,184 - 0.4
64,304 + -0.2
64,312 + 0.4
64,316 - 0.8
64,322 + 0.2
64,330 + -0.0
64,449 - -1.0
64,462 - 0.0
64,473 + -0.1
64,728 + 11565 mRNA_3197 0.19 1.3
64,742 + 11565 mRNA_3197 0.20 0.7