Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3190

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3189: 11557 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 46599 to 47566 11557 mRNA_3190: 11558 - KOG2427 Uncharacterized conserved protein, at 47974 to 50099 11558 mRNA_3191: 11559 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 50210 to 52668 11559

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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46,981 - 11557 mRNA_3189 0.39 0.1
47,066 + 11557 mRNA_3189 0.48 -0.0
47,406 + 11557 mRNA_3189 0.83 -0.3
47,485 - -0.6
47,532 + -0.9
47,659 + -0.4
47,669 + 0.3
47,704 + -0.2
47,789 - 0.8
47,790 + 0.7
47,797 + -0.4
47,813 + 0.9
47,948 + -0.1
47,983 + -0.8
47,985 - -0.2
48,088 + -0.0
48,108 + 2.3
48,260 + 11558 mRNA_3190 0.13 -0.2
48,260 - 11558 mRNA_3190 0.13 -0.0
48,263 + 11558 mRNA_3190 0.14 -0.9
48,269 + 11558 mRNA_3190 0.14 1.2
48,405 - 11558 mRNA_3190 0.20 -0.3
48,434 + 11558 mRNA_3190 0.22 1.1
48,549 + 11558 mRNA_3190 0.27 -0.0
48,918 - 11558 mRNA_3190 0.44 -0.9
48,991 + 11558 mRNA_3190 0.48 1.0
49,086 - 11558 mRNA_3190 0.52 -1.8
49,148 + 11558 mRNA_3190 0.55 0.3
49,405 - 11558 mRNA_3190 0.67 0.0
49,406 + 11558 mRNA_3190 0.67 -0.2
49,526 - 11558 mRNA_3190 0.73 -0.4
49,655 - 11558 mRNA_3190 0.79 -0.2
49,684 - 11558 mRNA_3190 0.80 -0.0
50,015 + 2.1
50,022 + -0.5
50,113 + 0.9
50,280 - 0.9
50,327 + 0.9
50,337 + 0.0
50,491 + 11559 mRNA_3191 0.11 -0.1
50,505 + 11559 mRNA_3191 0.12 0.1
50,598 + 11559 mRNA_3191 0.16 -0.3
50,645 - 11559 mRNA_3191 0.18 -0.3
50,826 - 11559 mRNA_3191 0.25 0.4
50,918 - 11559 mRNA_3191 0.29 0.9
51,048 - 11559 mRNA_3191 0.34 0.2