Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3189

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3188: 11556 - Hypothetical Protein, at 45440 to 45769 11556 mRNA_3189: 11557 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 46599 to 47566 11557 mRNA_3190: 11558 - KOG2427 Uncharacterized conserved protein, at 47974 to 50099 11558

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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45,630 + 11556 mRNA_3188 0.58 -0.4
45,652 - 11556 mRNA_3188 0.64 0.5
45,778 - 0.2
45,808 + 0.0
45,819 - -0.3
45,822 - -0.2
45,823 + -0.6
45,897 + 1.2
45,907 + 1.6
45,919 + 1.2
45,919 + 0.3
46,029 - 0.2
46,039 + 0.8
46,063 - 0.4
46,406 + -1.0
46,487 - 1.9
46,632 - 0.3
46,674 - 0.0
46,793 - 11557 mRNA_3189 0.20 0.1
46,952 + 11557 mRNA_3189 0.36 -0.5
46,981 - 11557 mRNA_3189 0.39 0.1
47,066 + 11557 mRNA_3189 0.48 -0.0
47,406 + 11557 mRNA_3189 0.83 -0.3
47,485 - -0.6
47,532 + -0.9
47,659 + -0.4
47,669 + 0.3
47,704 + -0.2
47,789 - 0.8
47,790 + 0.7
47,797 + -0.4
47,813 + 0.9
47,948 + -0.1
47,983 + -0.8
47,985 - -0.2
48,088 + -0.0
48,108 + 2.3
48,260 + 11558 mRNA_3190 0.13 -0.2
48,260 - 11558 mRNA_3190 0.13 -0.0
48,263 + 11558 mRNA_3190 0.14 -0.9
48,269 + 11558 mRNA_3190 0.14 1.2
48,405 - 11558 mRNA_3190 0.20 -0.3
48,434 + 11558 mRNA_3190 0.22 1.1
48,549 + 11558 mRNA_3190 0.27 -0.0