Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3187

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3186: 11554 - KOG4444 Peroxisomal assembly protein PEX3, at 41643 to 43993 11554 mRNA_3187: 11555 - BLAST Protein disulfide-isomerase erp38 [Hypsizygus marmoreus], at 44438 to 45168 11555 mRNA_3188: 11556 - Hypothetical Protein, at 45440 to 45769 11556

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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43,462 - 11554 mRNA_3186 0.77 0.7
44,021 + 0.6
44,125 - 0.8
44,133 - 0.8
44,161 - -0.8
44,186 - 0.8
44,198 + -0.3
44,319 + 0.2
44,606 + 11555 mRNA_3187 0.23 1.3
44,635 + 11555 mRNA_3187 0.27 0.3
44,751 - 11555 mRNA_3187 0.43 0.1
44,783 - 11555 mRNA_3187 0.47 1.4
44,901 - 11555 mRNA_3187 0.63 1.5
45,028 + 11555 mRNA_3187 0.81 -2.2
45,042 - 11555 mRNA_3187 0.83 0.9
45,247 + 1.3
45,485 - 11556 mRNA_3188 0.14 0.6
45,502 + 11556 mRNA_3188 0.19 -0.6
45,506 + 11556 mRNA_3188 0.20 -2.6
45,533 - 11556 mRNA_3188 0.28 -1.9
45,541 + 11556 mRNA_3188 0.31 -1.1
45,630 + 11556 mRNA_3188 0.58 -0.4
45,652 - 11556 mRNA_3188 0.64 0.5
45,778 - 0.2
45,808 + 0.0
45,819 - -0.3
45,822 - -0.2
45,823 + -0.6
45,897 + 1.2
45,907 + 1.6
45,919 + 1.2
45,919 + 0.3
46,029 - 0.2
46,039 + 0.8
46,063 - 0.4