Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3152

Experiments: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3151: 11519 - Hypothetical Protein, at 436481 to 438109 11519 mRNA_3152: 11520 - Interpro PET assembly of cytochrome c oxidase, mitochondrial, at 438780 to 439151 11520 mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439382 to 440661 11521

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
437,781 + 11519 mRNA_3151 0.80 0.8
437,786 - 11519 mRNA_3151 0.80 -0.0
437,793 + 11519 mRNA_3151 0.81 0.7
437,803 - 11519 mRNA_3151 0.81 -0.0
437,811 + 11519 mRNA_3151 0.82 0.7
437,818 - 11519 mRNA_3151 0.82 0.8
437,818 - 11519 mRNA_3151 0.82 0.6
437,819 + 11519 mRNA_3151 0.82 -0.4
437,820 - 11519 mRNA_3151 0.82 -0.1
437,825 - 11519 mRNA_3151 0.83 -0.4
437,826 - 11519 mRNA_3151 0.83 1.6
437,828 - 11519 mRNA_3151 0.83 -0.6
437,828 - 11519 mRNA_3151 0.83 0.1
437,830 - 11519 mRNA_3151 0.83 0.5
437,832 + 11519 mRNA_3151 0.83 -0.2
437,833 - 11519 mRNA_3151 0.83 0.5
437,835 - 11519 mRNA_3151 0.83 0.0
437,836 - 11519 mRNA_3151 0.83 1.3
437,836 + 11519 mRNA_3151 0.83 2.4
437,836 + 11519 mRNA_3151 0.83 1.0
437,839 - 11519 mRNA_3151 0.83 0.5
437,840 - 11519 mRNA_3151 0.83 1.3
437,840 - 11519 mRNA_3151 0.83 0.3
437,842 - 11519 mRNA_3151 0.84 -0.4
437,843 + 11519 mRNA_3151 0.84 0.5
437,844 - 11519 mRNA_3151 0.84 0.1
437,845 + 11519 mRNA_3151 0.84 1.0
437,846 - 11519 mRNA_3151 0.84 -0.0
437,847 + 11519 mRNA_3151 0.84 -0.3
437,847 + 11519 mRNA_3151 0.84 1.7
437,847 + 11519 mRNA_3151 0.84 -0.5
437,847 + 11519 mRNA_3151 0.84 0.7
437,848 + 11519 mRNA_3151 0.84 0.0
437,850 - 11519 mRNA_3151 0.84 0.5
437,850 + 11519 mRNA_3151 0.84 1.2
437,851 + 11519 mRNA_3151 0.84 0.5
437,851 + 11519 mRNA_3151 0.84 -0.5
437,852 + 11519 mRNA_3151 0.84 0.0
437,853 + 11519 mRNA_3151 0.84 -0.2
437,853 + 11519 mRNA_3151 0.84 -0.6
437,853 - 11519 mRNA_3151 0.84 0.2
437,854 - 11519 mRNA_3151 0.84 0.3
437,855 + 11519 mRNA_3151 0.84 -0.1
437,855 + 11519 mRNA_3151 0.84 0.3
437,856 + 11519 mRNA_3151 0.84 0.4
437,857 + 11519 mRNA_3151 0.84 0.2
437,862 - 11519 mRNA_3151 0.85 1.0
437,866 + 11519 mRNA_3151 0.85 1.2
437,867 + 11519 mRNA_3151 0.85 1.1
437,867 + 11519 mRNA_3151 0.85 -0.7
437,868 - 11519 mRNA_3151 0.85 0.0
437,870 + 11519 mRNA_3151 0.85 0.2
437,870 - 11519 mRNA_3151 0.85 -3.1
437,870 + 11519 mRNA_3151 0.85 -0.2
437,872 + 11519 mRNA_3151 0.85 -0.8
437,873 - 11519 mRNA_3151 0.85 -0.2
437,873 + 11519 mRNA_3151 0.85 0.4
437,874 + 11519 mRNA_3151 0.86 -1.5
437,874 + 11519 mRNA_3151 0.86 -0.2
437,884 + 11519 mRNA_3151 0.86 0.1
437,897 + 11519 mRNA_3151 0.87 -0.8
437,905 - 11519 mRNA_3151 0.87 -1.4
437,914 - 11519 mRNA_3151 0.88 0.4
437,920 + 11519 mRNA_3151 0.88 -0.0
437,924 - 11519 mRNA_3151 0.89 -0.1
437,927 - 11519 mRNA_3151 0.89 -0.8
437,927 + 11519 mRNA_3151 0.89 -0.2
437,936 + 11519 mRNA_3151 0.89 -0.2
437,936 - 11519 mRNA_3151 0.89 0.5
437,940 + 11519 mRNA_3151 0.90 -0.3
437,951 - 1.0
437,958 + 1.2
437,996 + 0.5
438,035 - 0.3
438,041 - -1.6
438,047 - 0.1
438,050 + 0.4
438,051 - -0.8
438,053 + -0.1
438,058 - 0.7
438,058 - -0.5
438,059 - -0.4
438,061 - -1.2
438,061 + 0.3
438,061 + -0.5
438,062 + -0.8
438,064 + 0.2
438,066 - -0.1
438,067 - 0.4
438,067 - 2.0
438,069 - 0.2
438,070 - 0.9
438,070 + 0.2
438,070 - 0.9
438,072 - 0.3
438,076 + -0.3
438,077 + 2.1
438,077 + -0.4
438,080 - -0.4
438,080 + 0.5
438,082 - 0.5
438,083 + 0.1
438,085 + 2.1
438,089 - 1.0
438,089 + -0.5
438,090 - 1.1
438,091 - 1.8
438,094 + -0.0
438,098 + -0.0
438,106 + 0.2
438,107 + -1.1
438,112 + -0.5
438,112 + -0.2
438,124 + -0.7
438,131 - 0.9
438,142 - -0.4
438,148 - 0.3
438,150 - -0.1
438,161 + -0.8
438,168 - 0.1
438,180 - -0.6
438,180 + -0.6
438,181 + -0.1
438,193 + -0.2
438,195 - 0.5
438,208 - 2.0
438,208 + -0.7
438,227 + -0.4
438,231 - 0.0
438,233 - 0.1
438,234 - -0.1
438,236 + 0.3
438,237 - 0.2
438,239 + 0.0
438,242 + 0.1
438,242 + -0.6
438,252 - 0.6
438,253 - 0.3
438,257 - 0.6
438,257 - -0.5
438,259 + 0.4
438,259 + -0.2
438,263 - -0.2
438,264 + 2.1
438,266 - -1.4
438,282 + 1.7
438,283 - 2.7
438,287 - 0.2
438,294 - 0.4
438,303 - 0.1
438,306 + 0.2
438,316 - 0.7
438,319 + 1.6
438,320 - -0.1
438,326 + 0.3
438,330 - -0.2
438,341 + -1.2
438,344 - -0.1
438,346 - -0.1
438,347 - -0.9
438,361 - -0.3
438,368 + 0.0
438,380 - -0.3
438,414 - -1.1
438,426 - 0.6
438,436 - -0.1
438,446 + 0.7
438,469 - 1.1
438,471 - 0.4
438,472 + -0.5
438,478 - 0.8
438,503 + 0.1
438,542 - 0.3
438,552 + 0.4
438,560 - 1.1
438,603 - 1.1
438,612 - 0.0
438,614 - -0.4
438,629 + -0.1
438,643 + -0.9
438,645 + -0.0
438,655 - -0.6
438,662 - 0.8
438,778 - 0.5
438,784 + -0.8
438,844 - 11520 mRNA_3152 0.17 -0.2
438,898 + 11520 mRNA_3152 0.32 0.1
438,920 + 11520 mRNA_3152 0.38 0.9
438,952 - 11520 mRNA_3152 0.46 -0.1
439,046 - 11520 mRNA_3152 0.72 1.2
439,067 - 11520 mRNA_3152 0.77 -0.1
439,080 + 11520 mRNA_3152 0.81 -0.4
439,089 + 11520 mRNA_3152 0.83 0.4
439,199 - -0.9
439,200 + -0.4
439,201 - -0.7
439,202 + 0.4
439,203 - 0.3
439,203 + 1.4
439,204 + 0.1
439,344 - -0.6
439,350 + 0.6
439,485 + 0.5
439,645 + 11521 mRNA_3153 0.21 0.4
439,674 + 11521 mRNA_3153 0.23 0.2
439,785 - 11521 mRNA_3153 0.31 0.7
439,787 + 11521 mRNA_3153 0.32 1.3
439,792 - 11521 mRNA_3153 0.32 -2.2
440,096 + 11521 mRNA_3153 0.56 0.2