Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3139

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3138: 11506 - K13106 BUD13, CWC26 pre-mRNA-splicing factor CWC26, at 408830 to 410030 11506 mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410271 to 410837 11507 mRNA_3140: 11508 - BLAST peptide release factor [Melanopsichium pennsylvanicum 4], at 411347 to 412227 11508

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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409,418 + 11506 mRNA_3138 0.49 0.0
409,533 - 11506 mRNA_3138 0.59 0.9
409,674 - 11506 mRNA_3138 0.70 -0.2
409,714 - 11506 mRNA_3138 0.74 0.9
409,887 + 11506 mRNA_3138 0.88 -1.0
409,919 + -0.2
409,981 + 0.7
409,982 - 0.2
410,015 - 0.2
410,053 - -0.7
410,116 + -0.4
410,149 + -0.0
410,325 + -0.3
410,342 + 11507 mRNA_3139 0.13 -0.1
410,423 - 11507 mRNA_3139 0.27 0.4
410,460 + 11507 mRNA_3139 0.33 -0.0
410,477 - 11507 mRNA_3139 0.36 0.2
410,560 + 11507 mRNA_3139 0.51 -1.0
410,576 + 11507 mRNA_3139 0.54 0.8
410,576 + 11507 mRNA_3139 0.54 0.4
410,587 + 11507 mRNA_3139 0.56 0.8
410,593 + 11507 mRNA_3139 0.57 -0.2
410,644 - 11507 mRNA_3139 0.66 0.7
410,720 + 11507 mRNA_3139 0.79 -0.2
410,758 - 11507 mRNA_3139 0.86 -0.3
410,795 + 1.5
410,798 - 0.7
410,855 + 1.0
410,860 - -0.8
410,866 - -0.6
410,927 + -0.1
410,955 - -0.0
410,963 - 1.9
410,978 - -0.1
410,998 + -0.0
411,007 + 1.3
411,012 - 1.7
411,019 + -0.3
411,021 + -0.8
411,021 + -0.2
411,032 - -0.7
411,045 - -0.8
411,076 + 0.2
411,102 + -0.1
411,118 - 0.7
411,122 - -0.0
411,130 - -1.0
411,141 + 0.3
411,147 + 0.4
411,147 + -0.4
411,155 - -0.8
411,156 - 0.7
411,157 + 0.0
411,163 - -0.2
411,165 - -0.1
411,166 + 2.4
411,168 - -0.1
411,175 + -0.3
411,178 - -0.2
411,180 - 0.0
411,183 + -0.6
411,192 + 2.6
411,193 - -0.1
411,194 - -0.8
411,211 - -0.2
411,218 - 0.8
411,218 - -0.0
411,220 + -0.1
411,231 + 0.2
411,232 - 0.4
411,236 + 0.6
411,237 + -0.1
411,238 + -1.5
411,261 + -0.2
411,262 + 0.6
411,274 + 0.4
411,275 + 0.9
411,276 + 1.0
411,293 - -0.2
411,293 + 0.1
411,295 + 0.5
411,301 - 0.7
411,303 + -0.2
411,310 + 0.1
411,317 - -0.0
411,333 + -0.5
411,381 - 0.6
411,394 + -0.5
411,422 - 0.5
411,435 - 11508 mRNA_3140 0.10 0.7
411,435 - 11508 mRNA_3140 0.10 0.0
411,436 + 11508 mRNA_3140 0.10 0.4
411,437 + 11508 mRNA_3140 0.10 0.2
411,449 - 11508 mRNA_3140 0.12 -0.1
411,454 + 11508 mRNA_3140 0.12 -0.2
411,588 - 11508 mRNA_3140 0.27 0.3
411,595 - 11508 mRNA_3140 0.28 0.7
411,745 + 11508 mRNA_3140 0.45 -1.5
411,770 - 11508 mRNA_3140 0.48 -0.1
411,815 + 11508 mRNA_3140 0.53 -0.8