Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3124

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3123: 11491 - HMMPfam-Ribosomal RNA adenine dimethylase-PF00398,SUPERFAMILY--SSF53335, at 371854 to 373401 11491 mRNA_3124: 11492 - K04079 HSP90A, htpG molecular chaperone HtpG, at 373558 to 376751 11492 mRNA_3125: 11493 - K08145 SLC2A8, GLUT8 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8, at 377288 to 379485 11493

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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372,782 - 11491 mRNA_3123 0.60 0.4
372,782 + 11491 mRNA_3123 0.60 0.8
372,818 - 11491 mRNA_3123 0.62 -0.0
372,832 - 11491 mRNA_3123 0.63 -0.9
372,940 - 11491 mRNA_3123 0.70 0.2
372,960 - 11491 mRNA_3123 0.71 -0.3
372,971 - 11491 mRNA_3123 0.72 -0.3
372,976 - 11491 mRNA_3123 0.72 -0.3
373,090 + 11491 mRNA_3123 0.80 -0.7
373,098 + 11491 mRNA_3123 0.80 -0.9
373,114 - 11491 mRNA_3123 0.81 -0.4
373,245 - 11491 mRNA_3123 0.90 -1.9
373,336 + -1.2
373,391 + 0.3
373,393 + 0.2
373,547 - 0.3
373,652 - -1.0
373,654 - -0.4
373,663 + -0.5
373,667 - 0.4
373,669 - 0.0
373,670 - 0.0
373,676 + -0.2
373,684 - -2.1
373,684 - -0.8
373,684 - -0.5
373,688 - -0.1
373,691 + 0.4
373,692 - 0.6
373,700 - -0.1
373,702 + -0.2
373,702 + 0.4
373,704 + -0.4
373,706 + -1.1
373,712 + -0.6
373,718 - -0.4
373,719 + -0.6
373,720 - 0.1
373,805 - 1.7
373,830 - -0.1
373,832 - 0.3
373,833 + 0.4
373,841 + -1.0
373,842 - 0.1
373,845 - 0.0
373,847 + 0.3
373,862 + 0.5
373,872 - 2.5
373,991 - 11492 mRNA_3124 0.14 1.4
373,994 + 11492 mRNA_3124 0.14 1.2
374,008 - 11492 mRNA_3124 0.14 1.4
374,012 + 11492 mRNA_3124 0.14 0.1
374,018 + 11492 mRNA_3124 0.14 0.8
374,025 - 11492 mRNA_3124 0.15 -0.6
374,032 - 11492 mRNA_3124 0.15 -0.7
374,176 - 11492 mRNA_3124 0.19 1.3
374,176 - 11492 mRNA_3124 0.19 0.4
374,286 + 11492 mRNA_3124 0.23 0.6
374,331 - 11492 mRNA_3124 0.24 0.0
374,341 + 11492 mRNA_3124 0.25 -0.1
374,459 + 11492 mRNA_3124 0.28 -0.4
374,463 - 11492 mRNA_3124 0.28 -0.6
374,481 - 11492 mRNA_3124 0.29 0.1
374,483 + 11492 mRNA_3124 0.29 0.2
374,489 - 11492 mRNA_3124 0.29 -0.2
374,575 + 11492 mRNA_3124 0.32 -0.4
374,601 - 11492 mRNA_3124 0.33 -0.5
374,714 - 11492 mRNA_3124 0.36 0.1
374,760 + 11492 mRNA_3124 0.38 0.3
374,763 - 11492 mRNA_3124 0.38 0.3
374,853 - 11492 mRNA_3124 0.41 -0.3
375,110 - 11492 mRNA_3124 0.49 -1.9
375,161 - 11492 mRNA_3124 0.50 -0.1
375,239 - 11492 mRNA_3124 0.53 0.0
375,320 - 11492 mRNA_3124 0.55 -0.2
375,361 + 11492 mRNA_3124 0.56 0.2
375,429 + 11492 mRNA_3124 0.59 -0.1
375,492 - 11492 mRNA_3124 0.61 -0.9
375,600 - 11492 mRNA_3124 0.64 0.7
375,803 - 11492 mRNA_3124 0.70 0.9
375,814 + 11492 mRNA_3124 0.71 -0.2
375,867 + 11492 mRNA_3124 0.72 -0.2
375,999 - 11492 mRNA_3124 0.76 0.7
376,064 - 11492 mRNA_3124 0.78 -0.4
376,065 + 11492 mRNA_3124 0.78 0.4
376,122 + 11492 mRNA_3124 0.80 0.0
376,175 - 11492 mRNA_3124 0.82 -0.2
376,241 - 11492 mRNA_3124 0.84 -0.6
376,262 - 11492 mRNA_3124 0.85 0.2
376,294 + 11492 mRNA_3124 0.86 -0.1
376,446 - 1.1
376,492 - -0.4
376,597 + -1.2
376,703 + 0.4
376,715 - 0.4
376,737 + 0.4
376,748 + 0.5
376,871 - -0.6
376,878 - 0.1
376,916 - 0.5
376,917 + -0.7
376,922 + -0.4
376,989 - -0.2
377,034 - -0.4
377,035 + 0.1
377,046 - 0.8
377,048 + 0.2
377,181 - -1.1
377,182 - -0.3
377,188 + 0.5