Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3103

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325747 to 328243 11470 mRNA_3103: 11471 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 328830 to 331254 11471 mRNA_3104: 11472 - HMMPfam-Uncharacterized conserved protein (DUF2156)-PF09924, at 331820 to 333279 11472

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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327,831 + 11470 mRNA_3102 0.83 -1.0
327,869 - 11470 mRNA_3102 0.85 0.3
327,876 - 11470 mRNA_3102 0.85 -0.1
328,304 - 0.2
328,318 - 0.7
328,320 - -0.4
328,341 + -0.5
328,457 + -0.2
328,496 + 0.2
328,548 - 1.1
328,864 + -0.4
328,932 + 0.7
328,998 - -0.0
329,099 - 11471 mRNA_3103 0.11 1.3
329,100 + 11471 mRNA_3103 0.11 0.4
329,100 + 11471 mRNA_3103 0.11 -0.1
329,961 + 11471 mRNA_3103 0.47 -0.4
329,963 - 11471 mRNA_3103 0.47 -0.1
330,001 + 11471 mRNA_3103 0.48 -0.8
330,436 + 11471 mRNA_3103 0.66 -0.3
330,609 + 11471 mRNA_3103 0.73 -0.3
330,999 + 11471 mRNA_3103 0.89 0.5
331,303 - -0.3
331,419 + -0.5
331,430 + 0.0
331,584 - 0.1
331,593 + 1.1
331,859 + -0.1
331,864 + -1.2
331,875 - -1.9
331,877 + 0.1
332,159 - 11472 mRNA_3104 0.23 0.9
332,167 + 11472 mRNA_3104 0.24 0.4