Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3090

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3089: 11457 - BLAST Rho GTPase-activating protein 30 [Larimichthys crocea], at 293855 to 294427 11457 mRNA_3090: 11458 - K03062 PSMC1, RPT2 26S proteasome regulatory subunit T2, at 294926 to 296826 11458 mRNA_3091: 11459 - K13303 SGK2 serum/glucocorticoid-regulated kinase 2, at 296743 to 299433 11459

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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294,052 - 11457 mRNA_3089 0.34 -0.7
294,064 - 11457 mRNA_3089 0.36 0.8
294,079 + 11457 mRNA_3089 0.39 -0.0
294,167 + 11457 mRNA_3089 0.54 0.1
294,209 - 11457 mRNA_3089 0.62 0.8
294,360 - 11457 mRNA_3089 0.88 1.0
294,390 + 0.7
294,391 - 0.6
294,542 - -0.6
294,550 + -0.2
294,550 - 0.0
294,550 - 1.2
294,557 + -1.0
294,562 + 0.2
294,563 + 0.4
294,564 - -0.3
294,567 - -0.4
294,595 + 0.5
294,596 - -1.2
294,819 - 0.2
294,833 - -0.1
294,847 + 1.3
294,977 - 0.0
294,984 - -0.8
294,996 + 0.3
295,044 - 1.0
295,138 - 11458 mRNA_3090 0.11 0.4
295,338 - 11458 mRNA_3090 0.22 -1.5
295,554 + 11458 mRNA_3090 0.33 0.7
295,583 - 11458 mRNA_3090 0.35 0.0
295,895 - 11458 mRNA_3090 0.51 1.0
295,975 - 11458 mRNA_3090 0.55 0.7
296,131 - 11458 mRNA_3090 0.63 -0.7
296,280 + 11458 mRNA_3090 0.71 -0.1
296,307 + 11458 mRNA_3090 0.73 0.4
296,441 - 11458 mRNA_3090 0.80 1.0
296,535 + 11458 mRNA_3090 0.85 1.7
296,585 + 11458 mRNA_3090 0.87 -0.9
296,678 - 0.2
296,858 - -0.1
296,877 - 0.9
297,195 - 11459 mRNA_3091 0.17 -0.2
297,324 + 11459 mRNA_3091 0.22 -0.0
297,437 - 11459 mRNA_3091 0.26 -0.3
297,582 - 11459 mRNA_3091 0.31 0.8
297,582 + 11459 mRNA_3091 0.31 -0.4
297,631 + 11459 mRNA_3091 0.33 0.5