Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3084

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281026 to 282865 11451 mRNA_3084: 11452 - Hypothetical Protein, at 282989 to 283312 11452

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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282,014 + 11451 mRNA_3083 0.54 -0.3
282,020 - 11451 mRNA_3083 0.54 0.4
282,021 - 11451 mRNA_3083 0.54 0.0
282,021 + 11451 mRNA_3083 0.54 -0.2
282,024 - 11451 mRNA_3083 0.54 1.7
282,026 - 11451 mRNA_3083 0.54 -1.2
282,026 + 11451 mRNA_3083 0.54 0.5
282,035 - 11451 mRNA_3083 0.55 -0.8
282,037 - 11451 mRNA_3083 0.55 0.7
282,041 - 11451 mRNA_3083 0.55 0.4
282,042 + 11451 mRNA_3083 0.55 -1.9
282,045 - 11451 mRNA_3083 0.55 0.2
282,050 + 11451 mRNA_3083 0.56 0.3
282,059 + 11451 mRNA_3083 0.56 -1.0
282,071 - 11451 mRNA_3083 0.57 -1.0
282,072 - 11451 mRNA_3083 0.57 0.4
282,079 - 11451 mRNA_3083 0.57 -0.5
282,082 + 11451 mRNA_3083 0.57 -0.9
282,085 - 11451 mRNA_3083 0.58 0.8
282,087 - 11451 mRNA_3083 0.58 0.0
282,087 + 11451 mRNA_3083 0.58 -0.2
282,088 + 11451 mRNA_3083 0.58 -0.1
282,089 - 11451 mRNA_3083 0.58 0.6
282,093 + 11451 mRNA_3083 0.58 -0.8
282,093 + 11451 mRNA_3083 0.58 -0.4
282,100 - 11451 mRNA_3083 0.58 -0.0
282,101 + 11451 mRNA_3083 0.58 -0.5
282,106 + 11451 mRNA_3083 0.59 0.9
282,109 + 11451 mRNA_3083 0.59 -0.2
282,117 + 11451 mRNA_3083 0.59 -0.1
282,132 - 11451 mRNA_3083 0.60 -0.5
282,136 + 11451 mRNA_3083 0.60 -0.8
282,136 + 11451 mRNA_3083 0.60 -0.1
282,137 - 11451 mRNA_3083 0.60 1.0
282,142 + 11451 mRNA_3083 0.61 0.3
282,143 + 11451 mRNA_3083 0.61 0.4
282,145 - 11451 mRNA_3083 0.61 -0.5
282,168 - 11451 mRNA_3083 0.62 -1.0
282,169 - 11451 mRNA_3083 0.62 0.2
282,187 - 11451 mRNA_3083 0.63 0.5
282,201 - 11451 mRNA_3083 0.64 -1.0
282,209 - 11451 mRNA_3083 0.64 -0.6
282,233 - 11451 mRNA_3083 0.66 -0.6
282,241 + 11451 mRNA_3083 0.66 1.0
282,251 - 11451 mRNA_3083 0.67 -0.6
282,260 - 11451 mRNA_3083 0.67 -0.8
282,338 - 11451 mRNA_3083 0.71 -0.2
282,338 + 11451 mRNA_3083 0.71 -0.9
282,340 + 11451 mRNA_3083 0.71 0.2
282,359 + 11451 mRNA_3083 0.72 -0.2
282,367 - 11451 mRNA_3083 0.73 0.1
282,367 - 11451 mRNA_3083 0.73 0.8
282,379 - 11451 mRNA_3083 0.74 -0.3
282,379 - 11451 mRNA_3083 0.74 0.0
282,385 + 11451 mRNA_3083 0.74 -1.1
282,392 + 11451 mRNA_3083 0.74 -1.8
282,411 + 11451 mRNA_3083 0.75 1.0
282,412 + 11451 mRNA_3083 0.75 -0.1
282,412 + 11451 mRNA_3083 0.75 -0.4
282,418 + 11451 mRNA_3083 0.76 -1.4
282,419 + 11451 mRNA_3083 0.76 -0.2
282,424 + 11451 mRNA_3083 0.76 -1.1
282,424 + 11451 mRNA_3083 0.76 -1.1
282,429 - 11451 mRNA_3083 0.76 0.0
282,452 + 11451 mRNA_3083 0.78 0.2
282,456 + 11451 mRNA_3083 0.78 -0.3
282,457 + 11451 mRNA_3083 0.78 -0.3
282,469 + 11451 mRNA_3083 0.78 0.1
282,482 + 11451 mRNA_3083 0.79 -0.9
282,486 - 11451 mRNA_3083 0.79 0.0
282,540 - 11451 mRNA_3083 0.82 -1.0
282,545 - 11451 mRNA_3083 0.83 0.4
282,552 + 11451 mRNA_3083 0.83 -0.4
282,601 + 11451 mRNA_3083 0.86 0.8
282,616 - 11451 mRNA_3083 0.86 0.3
282,634 + 11451 mRNA_3083 0.87 0.5
282,642 - 11451 mRNA_3083 0.88 0.7
282,681 - 11451 mRNA_3083 0.90 0.1
282,694 + 0.2
282,707 - -0.5
282,709 - 0.5
282,709 + -0.5
282,712 - 0.0
282,713 + 0.1
282,718 - -0.4
282,733 - -0.3
282,758 + 0.0
282,761 + -0.5
282,779 + 0.2
282,784 + -0.2
282,861 - 0.3
282,864 - 1.1
282,866 - 0.8
282,906 - -1.1
282,909 + 0.6
282,947 - -0.0
282,953 + -1.9
282,962 - 0.7
282,968 + 0.1
282,995 + 0.1
283,012 - 0.5
283,022 + 11452 mRNA_3084 0.10 -1.6
283,043 - 11452 mRNA_3084 0.17 0.3
283,073 + 11452 mRNA_3084 0.26 0.2
283,099 + 11452 mRNA_3084 0.34 -0.7
283,099 + 11452 mRNA_3084 0.34 1.7
283,102 - 11452 mRNA_3084 0.35 -1.2
283,114 + 11452 mRNA_3084 0.39 -1.4
283,149 + 11452 mRNA_3084 0.49 0.6
283,241 - 11452 mRNA_3084 0.78 0.1
283,251 - 11452 mRNA_3084 0.81 -0.5
283,252 + 11452 mRNA_3084 0.81 0.1
283,271 + 11452 mRNA_3084 0.87 -1.3
283,272 + 11452 mRNA_3084 0.87 -1.2
283,419 - -0.0
283,531 + -0.3
283,534 + 0.3
283,545 + -0.5
283,545 + -0.8
283,547 - -0.9
283,563 + -1.2
283,580 + 0.3
283,710 + -0.3
283,826 - -0.1
283,827 + -0.3
283,844 + -0.2
283,854 + -0.3
283,858 + -0.1
283,858 + -0.4
283,860 - 0.3
283,861 + -0.4
283,863 - -0.8
283,864 + -0.5
283,865 + -0.4
283,869 - 0.7
283,995 + 0.9
283,996 - 0.2
284,003 + 0.2
284,012 + -0.1
284,017 + 0.2
284,047 + -1.6
284,134 + -1.7
284,141 - 0.1
284,143 - -0.1
284,148 + -0.7
284,167 + -0.0
284,170 - -1.2
284,171 + 2.3
284,222 + 1.2
284,282 + -0.6
284,302 - 0.6
284,309 + -0.3