Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3080

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270913 to 272289 11447 mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272562 to 274087 11448 mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274779 to 278054 11449

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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271,602 - 11447 mRNA_3079 0.50 0.2
271,625 + 11447 mRNA_3079 0.52 -1.0
271,650 - 11447 mRNA_3079 0.54 -0.4
271,669 - 11447 mRNA_3079 0.55 0.7
271,710 - 11447 mRNA_3079 0.58 0.0
271,710 - 11447 mRNA_3079 0.58 -0.5
271,757 - 11447 mRNA_3079 0.61 0.2
271,906 + 11447 mRNA_3079 0.72 -1.5
271,953 + 11447 mRNA_3079 0.76 -4.2
272,120 - 11447 mRNA_3079 0.88 -0.7
272,174 + 0.3
272,189 + 0.9
272,331 + 0.5
272,339 + 1.6
272,466 - 0.2
272,493 - 1.0
272,581 + 1.4
272,620 - 1.0
272,903 - 11448 mRNA_3080 0.22 0.6
273,232 - 11448 mRNA_3080 0.44 -0.6
273,328 - 11448 mRNA_3080 0.50 -0.1
273,384 - 11448 mRNA_3080 0.54 -0.4
273,503 - 11448 mRNA_3080 0.62 0.0
273,513 + 11448 mRNA_3080 0.62 0.0
273,519 - 11448 mRNA_3080 0.63 0.1
273,830 + 11448 mRNA_3080 0.83 -0.0
273,833 + 11448 mRNA_3080 0.83 -0.3
273,934 + 11448 mRNA_3080 0.90 1.0
274,113 + 0.3
274,113 + -0.1
274,122 + -0.1
274,246 + 0.7
274,257 + -1.4
274,259 + 1.4
274,259 - -0.8
274,267 + 0.3
274,272 + 0.1
274,273 + 1.2
274,284 + 0.7
274,285 - 0.6
274,285 - 0.4
274,286 - 0.2
274,295 + 1.3
274,295 + 0.0
274,296 - -0.5
274,301 + -1.8
274,332 + 0.2
274,356 - -0.2
274,357 + -0.4
274,357 + 1.8
274,393 - -0.2
274,393 - -0.1
274,413 + -0.5
274,417 + 0.4
274,421 - -0.2
274,433 - -1.8
274,437 + 0.4
274,452 + 0.2
274,452 - -1.1
274,536 + 0.2
274,542 - 0.5
274,545 + 1.1
274,568 - 0.8
274,587 + -0.0
274,695 + -0.3
274,697 + -1.1
274,807 + 0.1
274,815 - 0.6
274,827 - 0.1
274,836 - 0.1
274,867 - -0.5
274,952 - 0.4
274,983 - 0.8
275,000 + -0.7