Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3055

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3054: 11422 - Hypothetical Protein, at 207270 to 207722 11422 mRNA_3055: 11423 - Hypothetical Protein, at 208583 to 210185 11423 mRNA_3056: 11424 - K11290 SET, TAF1, I2PP2A template-activating factor I, at 210409 to 211861 11424

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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207,643 - 11422 mRNA_3054 0.82 0.2
207,643 - 11422 mRNA_3054 0.82 0.1
207,818 + 0.1
207,925 + -0.2
207,955 - 2.2
208,071 - -0.9
208,092 - -0.5
208,096 + 0.4
208,099 - 0.3
208,100 - -0.6
208,101 + -1.2
208,103 + 1.3
208,108 - 0.9
208,108 + 0.5
208,108 + -0.0
208,112 - 0.3
208,118 + -0.1
208,123 - 0.9
208,124 + -0.0
208,155 - 1.5
208,223 + -1.0
208,228 - -1.1
208,229 + 0.3
208,239 - 0.4
208,248 + -0.7
208,253 + -1.2
208,259 - 0.3
208,392 - 1.9
208,397 - -2.5
208,400 - 0.2
208,414 + 0.2
208,420 + -1.2
208,523 + 0.0
208,561 - -1.1
208,653 + 0.4
208,681 + -0.7
208,689 + 0.8
208,806 - 11423 mRNA_3055 0.14 -0.1
208,834 - 11423 mRNA_3055 0.16 1.8
208,839 + 11423 mRNA_3055 0.16 0.5
208,976 - 11423 mRNA_3055 0.25 -1.0
209,004 + 11423 mRNA_3055 0.26 1.0
209,114 + 11423 mRNA_3055 0.33 0.2
209,404 - 11423 mRNA_3055 0.51 0.6
209,458 - 11423 mRNA_3055 0.55 0.9
209,611 - 11423 mRNA_3055 0.64 -0.6
209,839 + 11423 mRNA_3055 0.78 1.9
209,847 + 11423 mRNA_3055 0.79 1.1
210,000 - 11423 mRNA_3055 0.88 0.5
210,001 + 11423 mRNA_3055 0.88 -0.2
210,018 + 11423 mRNA_3055 0.90 -1.1
210,149 + -0.2
210,189 - 0.5
210,307 - 0.8
210,320 + -0.1
210,333 + 1.7
210,347 + -0.1
210,410 + 1.1
210,500 + 0.1
210,618 + 11424 mRNA_3056 0.14 0.2
210,739 + 11424 mRNA_3056 0.23 0.8
210,743 - 11424 mRNA_3056 0.23 -0.8
210,774 - 11424 mRNA_3056 0.25 0.8
210,913 - 11424 mRNA_3056 0.35 0.0
210,984 + 11424 mRNA_3056 0.40 -0.9
211,027 + 11424 mRNA_3056 0.43 0.7
211,181 + 11424 mRNA_3056 0.53 0.7