Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3033

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3032: 11400 - K09489 HSPA4 heat shock 70kDa protein 4, at 140473 to 143328 11400 mRNA_3033: 11401 - BLAST related to transcription factor medusa [Melanopsichiu..., at 143853 to 146672 11401

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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143,385 - 1.1
143,400 + -0.5
143,402 - 0.9
143,503 - 1.4
143,514 - -1.1
143,514 - -1.9
143,526 + -0.5
143,528 + 0.9
143,535 + -0.3
143,689 + 2.0
143,696 + 0.1
143,712 - 0.1
143,853 + -0.5
143,905 + -0.4
143,983 - -0.3
143,997 - 0.9
144,100 - -0.1
144,253 - 11401 mRNA_3033 0.14 -0.2
144,460 + 11401 mRNA_3033 0.22 -0.2
144,556 + 11401 mRNA_3033 0.25 0.2
144,689 - 11401 mRNA_3033 0.30 -2.3
144,737 + 11401 mRNA_3033 0.31 -2.0
144,819 - 11401 mRNA_3033 0.34 -0.8
145,046 + 11401 mRNA_3033 0.42 -1.6
145,146 + 11401 mRNA_3033 0.46 -1.3
145,430 + 11401 mRNA_3033 0.56 -1.2
145,728 - 11401 mRNA_3033 0.66 -0.7
145,912 - 11401 mRNA_3033 0.73 -0.2
146,010 - 11401 mRNA_3033 0.76 -1.3
146,164 + 11401 mRNA_3033 0.82 0.1
146,169 - 11401 mRNA_3033 0.82 -0.9
146,173 - 11401 mRNA_3033 0.82 -1.0
146,333 - 11401 mRNA_3033 0.88 -1.1
146,367 + 11401 mRNA_3033 0.89 0.5
146,453 - -1.0
146,481 + -0.8
146,482 + -0.6
146,496 - -1.1
146,638 - -2.2
146,715 + -1.8
146,757 - -0.5
146,776 + 0.2
146,902 - -1.2
146,910 - -1.1
146,915 - -1.4
146,924 - -0.6
146,927 + 0.5
146,931 + 0.3
146,958 + 0.6
147,063 + -0.2
147,070 - 0.1
147,079 - -1.3
147,080 + 0.2
147,081 + -0.5
147,083 - -0.6
147,084 + -0.1
147,084 - -0.6
147,086 - -0.6
147,089 - -1.1
147,094 - -0.3
147,098 - 0.4
147,099 + -0.8
147,101 - 0.1
147,101 - 1.0
147,102 - 0.2
147,103 + 2.0
147,103 - -0.1
147,104 + -0.2
147,105 + 0.3
147,105 - -0.3
147,105 + -0.7
147,106 + -0.0
147,107 + 0.7
147,108 + -0.4
147,108 - 0.0
147,117 - -0.4
147,118 + 0.6
147,121 - 0.2
147,121 - -0.6
147,121 - 0.1
147,124 + -0.5
147,125 + -0.1
147,125 + 0.7
147,127 - -0.3
147,130 + 1.2
147,139 - 0.5
147,139 - 0.0
147,140 + 0.1
147,140 - -0.1
147,141 - 0.1
147,142 + 0.1
147,143 - -0.3
147,161 - -2.1
147,162 - -0.9
147,164 - -1.1
147,168 + 0.8
147,176 + 1.0
147,195 + -0.8
147,209 - -1.4
147,224 + 1.3
147,246 - -0.3
147,249 - -0.4
147,258 + -0.1
147,289 - -0.7
147,341 - -0.6
147,346 + 0.3
147,346 + -0.3
147,350 - 0.5
147,355 + 0.4
147,356 - -2.1
147,356 - 0.1
147,359 - 1.6
147,359 - -0.1
147,359 + 1.4
147,360 - -0.4
147,360 - 0.3
147,367 - 0.4
147,371 + 0.3
147,379 - 0.4
147,381 - -0.5
147,383 - 0.7
147,384 - 0.6
147,385 - -0.2
147,413 - -1.0
147,524 - -0.1