Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3025

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3024: 11392 - K20366 ERGIC2, ERV41 endoplasmic reticulum-Golgi intermediate compartment protein 2, at 121077 to 122686 11392 mRNA_3025: 11393 - K11354 cph1 two-component system, chemotaxis family, sensor kinase Cph1, at 123207 to 127605 11393 mRNA_3026: 11394 - Hypothetical Protein, at 128270 to 129253 11394

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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122,423 + 11392 mRNA_3024 0.84 0.3
122,474 + 11392 mRNA_3024 0.87 0.1
122,561 + -0.6
122,615 + -0.3
122,615 + 0.4
122,669 - 0.0
122,902 + 0.4
122,918 - 0.2
122,921 + -0.9
123,047 - -0.1
123,060 - -0.1
123,071 + 1.6
123,072 + -1.1
123,194 - 0.1
123,384 + 0.7
123,385 + -0.1
123,403 + 0.4
123,413 + 0.8
123,687 - 11393 mRNA_3025 0.11 0.1
123,806 + 11393 mRNA_3025 0.14 1.2
123,811 + 11393 mRNA_3025 0.14 1.0
124,050 - 11393 mRNA_3025 0.19 -0.9
124,070 + 11393 mRNA_3025 0.20 0.2
124,073 + 11393 mRNA_3025 0.20 -0.9
124,078 + 11393 mRNA_3025 0.20 0.2
124,152 + 11393 mRNA_3025 0.21 0.0
124,255 + 11393 mRNA_3025 0.24 -0.3
124,299 - 11393 mRNA_3025 0.25 0.1
124,812 + 11393 mRNA_3025 0.36 0.6
124,830 + 11393 mRNA_3025 0.37 0.3
124,833 + 11393 mRNA_3025 0.37 -0.2
125,102 + 11393 mRNA_3025 0.43 0.8
125,146 + 11393 mRNA_3025 0.44 -0.1
125,538 - 11393 mRNA_3025 0.53 -0.6
125,561 - 11393 mRNA_3025 0.54 1.2
125,660 + 11393 mRNA_3025 0.56 0.4
125,973 - 11393 mRNA_3025 0.63 0.7
125,973 - 11393 mRNA_3025 0.63 0.9
126,264 - 11393 mRNA_3025 0.69 -0.3
126,378 + 11393 mRNA_3025 0.72 0.2
126,540 - 11393 mRNA_3025 0.76 -0.8
126,601 - 11393 mRNA_3025 0.77 1.3
126,676 - 11393 mRNA_3025 0.79 -0.6
126,682 - 11393 mRNA_3025 0.79 -0.2
126,751 + 11393 mRNA_3025 0.81 -1.2
126,818 - 11393 mRNA_3025 0.82 0.1
126,876 - 11393 mRNA_3025 0.83 -1.3
126,947 + 11393 mRNA_3025 0.85 0.9
126,994 + 11393 mRNA_3025 0.86 0.3
127,111 + 11393 mRNA_3025 0.89 0.7
127,134 - 11393 mRNA_3025 0.89 -1.1
127,152 - 11393 mRNA_3025 0.90 -1.0
127,162 + 11393 mRNA_3025 0.90 -0.6
127,314 - -0.7
127,707 + -0.1
127,718 + -0.1
127,744 + -0.4
127,809 + -0.7
127,854 + -0.2
127,855 - -1.1
128,204 + -0.2
128,430 - 11394 mRNA_3026 0.16 -0.7
128,464 + 11394 mRNA_3026 0.20 0.6