Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2888

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2887: 11255 - K07442 TRM61, GCD14 tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit, at 458953 to 460669 11255 mRNA_2888: 11256 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 461121 to 465686 11256 mRNA_2889: 11257 - K08184 SLC16A7 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 7, at 466050 to 468099 11257

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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460,666 + 0.3
460,673 - 0.4
460,845 - 2.1
460,875 - 1.9
460,939 - 0.1
460,958 - -0.9
460,973 - 0.1
460,975 + 0.7
460,985 - 0.1
460,985 + 0.3
460,998 - -0.7
461,000 + -0.8
461,005 + 0.1
461,019 - -1.2
461,102 - -0.4
461,131 + -0.4
461,131 + -0.1
461,139 - -0.1
461,173 + -0.6
461,231 - 0.4
461,277 - -0.1
461,289 - -0.7
461,318 - 1.0
461,326 + 1.5
461,384 + 0.1
461,411 - -0.2
461,449 - -0.1
461,475 - -0.1
461,595 + 11256 mRNA_2888 0.10 0.2
461,720 + 11256 mRNA_2888 0.13 -1.2
461,847 + 11256 mRNA_2888 0.16 1.1
461,986 - 11256 mRNA_2888 0.19 0.3
462,151 + 11256 mRNA_2888 0.23 -0.2
462,306 - 11256 mRNA_2888 0.26 0.6
462,318 + 11256 mRNA_2888 0.26 -0.8
462,367 - 11256 mRNA_2888 0.27 -0.8
462,563 - 11256 mRNA_2888 0.32 0.1
462,682 + 11256 mRNA_2888 0.34 -0.5
462,883 - 11256 mRNA_2888 0.39 -0.4
462,940 + 11256 mRNA_2888 0.40 0.3
463,043 + 11256 mRNA_2888 0.42 -0.9
463,233 - 11256 mRNA_2888 0.46 0.2
463,331 + 11256 mRNA_2888 0.48 -0.6
463,377 + 11256 mRNA_2888 0.49 0.5
463,379 - 11256 mRNA_2888 0.49 -0.2
463,419 + 11256 mRNA_2888 0.50 -0.1
463,482 + 11256 mRNA_2888 0.52 0.6
463,636 + 11256 mRNA_2888 0.55 0.3
464,057 - 11256 mRNA_2888 0.64 -0.3
464,215 - 11256 mRNA_2888 0.68 1.4
464,239 - 11256 mRNA_2888 0.68 0.6
464,372 - 11256 mRNA_2888 0.71 0.9
464,373 - 11256 mRNA_2888 0.71 0.2
464,408 + 11256 mRNA_2888 0.72 0.0
464,524 + 11256 mRNA_2888 0.75 0.6
464,598 - 11256 mRNA_2888 0.76 0.2
464,624 + 11256 mRNA_2888 0.77 -1.3
464,625 - 11256 mRNA_2888 0.77 0.2
464,780 - 11256 mRNA_2888 0.80 2.1
464,955 + 11256 mRNA_2888 0.84 -0.5
464,982 - 11256 mRNA_2888 0.85 -0.5
465,112 - 11256 mRNA_2888 0.87 0.1
465,119 + 11256 mRNA_2888 0.88 0.0
465,129 + 11256 mRNA_2888 0.88 0.1
465,154 - 11256 mRNA_2888 0.88 0.1
465,289 + -0.0
465,571 + 0.4
465,846 - 0.5
465,865 + 0.3
465,933 - -0.3
465,968 - 0.1
465,973 + 1.5
465,982 + -1.1
465,983 - -0.2
465,991 + -0.2
466,133 - -0.9
466,153 - 0.4
466,193 + -0.6
466,270 - 11257 mRNA_2889 0.11 0.6
466,271 - 11257 mRNA_2889 0.11 1.3
466,284 + 11257 mRNA_2889 0.11 -1.4