Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2874

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2873: 11241 - HMMPfam-Yeast cortical protein KAR9-PF08580,ProSiteProfiles-GAR domain profile.-PS51460,SUPERFAMILY--SSF143575, at 414211 to 417159 11241 mRNA_2874: 11242 - K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase, at 417421 to 420167 11242 mRNA_2875: 11243 - HMMPfam-NMT1/THI5 like-PF09084,SUPERFAMILY--SSF53850, at 420566 to 422079 11243

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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416,511 - 11241 mRNA_2873 0.78 1.2
416,655 + 11241 mRNA_2873 0.83 0.5
416,776 + 11241 mRNA_2873 0.87 1.4
416,954 + 1.2
417,076 - -0.1
417,083 - -0.4
417,214 - -0.1
417,224 - 1.1
417,232 - -0.5
417,244 + 0.5
417,246 + 0.2
417,250 + 0.7
417,250 - 1.3
417,251 + -1.2
417,252 + 0.3
417,260 - 0.5
417,261 - 0.6
417,380 - -0.3
417,582 + 0.2
417,679 - 0.8
417,713 + 11242 mRNA_2874 0.11 0.4
418,548 - 11242 mRNA_2874 0.41 -0.3
419,349 - 11242 mRNA_2874 0.70 0.1
419,578 - 11242 mRNA_2874 0.79 0.3
420,151 - -1.5
420,155 + 0.5
420,397 - -0.4
420,604 + 0.0
420,729 - 11243 mRNA_2875 0.11 -0.1
420,794 - 11243 mRNA_2875 0.15 1.0
420,794 - 11243 mRNA_2875 0.15 -0.0
420,835 + 11243 mRNA_2875 0.18 0.1
420,883 - 11243 mRNA_2875 0.21 -1.1
420,887 + 11243 mRNA_2875 0.21 0.3