Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2873

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2872: 11240 - HMMPfam-Pyridine nucleotide-disulphide oxidoreductase-PF00070,PRINTS-FAD-dependent pyridine nucleotide reductase signature-PR00368,PRINTS-Pyridine nucleotide disulphide reductase class-I signature-PR00411,SUPERFAMILY--SSF51905, at 412487 to 414015 11240 mRNA_2873: 11241 - HMMPfam-Yeast cortical protein KAR9-PF08580,ProSiteProfiles-GAR domain profile.-PS51460,SUPERFAMILY--SSF143575, at 414211 to 417159 11241 mRNA_2874: 11242 - K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase, at 417421 to 420167 11242

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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413,579 - 11240 mRNA_2872 0.71 0.6
413,636 + 11240 mRNA_2872 0.75 -0.1
413,685 + 11240 mRNA_2872 0.78 0.2
413,763 + 11240 mRNA_2872 0.83 -0.1
413,775 + 11240 mRNA_2872 0.84 -2.2
413,884 + -0.0
414,035 - 0.1
414,053 + -0.0
414,219 - -0.6
414,225 + 1.0
414,313 + 0.9
414,605 - 11241 mRNA_2873 0.13 -0.7
414,720 - 11241 mRNA_2873 0.17 0.1
414,815 - 11241 mRNA_2873 0.20 0.4
414,898 + 11241 mRNA_2873 0.23 -0.1
415,153 - 11241 mRNA_2873 0.32 -0.5
415,475 + 11241 mRNA_2873 0.43 -0.3
416,056 - 11241 mRNA_2873 0.63 0.3
416,060 - 11241 mRNA_2873 0.63 0.6
416,080 + 11241 mRNA_2873 0.63 1.6
416,160 + 11241 mRNA_2873 0.66 0.1
416,407 - 11241 mRNA_2873 0.74 2.1
416,511 - 11241 mRNA_2873 0.78 1.2
416,655 + 11241 mRNA_2873 0.83 0.5
416,776 + 11241 mRNA_2873 0.87 1.4
416,954 + 1.2
417,076 - -0.1
417,083 - -0.4
417,214 - -0.1
417,224 - 1.1
417,232 - -0.5
417,244 + 0.5
417,246 + 0.2
417,250 + 0.7
417,250 - 1.3
417,251 + -1.2
417,252 + 0.3
417,260 - 0.5
417,261 - 0.6
417,380 - -0.3
417,582 + 0.2
417,679 - 0.8
417,713 + 11242 mRNA_2874 0.11 0.4