Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2841

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2840: 11208 - KOG4178 Soluble epoxide hydrolase, at 338126 to 339492 11208 mRNA_2841: 11209 - KOG3290 Peroxisomal phytanoyl-CoA hydroxylase, at 339851 to 340983 11209 mRNA_2842: 11210 - Hypothetical Protein, at 341749 to 343529 11210

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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338,862 + 11208 mRNA_2840 0.54 -1.5
338,928 - 11208 mRNA_2840 0.59 0.7
339,177 - 11208 mRNA_2840 0.77 0.1
339,197 - 11208 mRNA_2840 0.78 0.3
339,313 + 11208 mRNA_2840 0.87 -0.2
339,494 + -0.3
339,515 + -0.5
339,621 + 0.8
339,632 - -1.2
339,643 + 0.4
339,646 + -1.2
339,748 - 0.6
339,801 - -0.1
339,807 - -0.3
339,890 - -1.2
339,928 - 0.0
339,948 + -0.2
339,951 - 1.7
339,961 - 0.2
340,069 - 11209 mRNA_2841 0.19 1.4
340,086 - 11209 mRNA_2841 0.21 0.5
340,101 - 11209 mRNA_2841 0.22 0.1
340,240 + 11209 mRNA_2841 0.34 -1.1
340,396 - 11209 mRNA_2841 0.48 -1.0
340,398 - 11209 mRNA_2841 0.48 -0.2
340,531 + 11209 mRNA_2841 0.60 -0.2
340,672 + 11209 mRNA_2841 0.72 -0.2
341,047 - -1.4
341,054 + 0.0
341,127 - -0.8
341,144 + 0.5
341,278 + 0.3
341,785 - 0.0