Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2839

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2838: 11206 - K02934 RP-L6e, RPL6 large subunit ribosomal protein L6e, at 331899 to 332766 11206 mRNA_2839: 11207 - K01427 URE urease, at 333745 to 337824 11207 mRNA_2840: 11208 - KOG4178 Soluble epoxide hydrolase, at 338126 to 339492 11208

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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333,212 + 0.1
333,323 + -0.7
333,347 + -2.7
333,358 - 0.3
333,362 + -0.7
333,495 - 0.1
333,642 + 0.8
333,671 + -0.5
333,782 + -0.9
333,957 + 0.1
334,218 - 11207 mRNA_2839 0.12 -0.4
334,220 - 11207 mRNA_2839 0.12 0.3
334,431 + 11207 mRNA_2839 0.17 0.3
334,542 + 11207 mRNA_2839 0.20 1.0
334,542 + 11207 mRNA_2839 0.20 0.1
334,542 - 11207 mRNA_2839 0.20 -0.2
334,685 - 11207 mRNA_2839 0.23 0.0
334,827 + 11207 mRNA_2839 0.27 -0.0
334,875 - 11207 mRNA_2839 0.28 -0.1
334,982 - 11207 mRNA_2839 0.30 -0.0
335,263 - 11207 mRNA_2839 0.37 -0.3
335,402 - 11207 mRNA_2839 0.41 0.2
335,524 - 11207 mRNA_2839 0.44 0.5
335,548 - 11207 mRNA_2839 0.44 1.9
335,681 - 11207 mRNA_2839 0.47 0.2
336,001 - 11207 mRNA_2839 0.55 -0.1
336,170 + 11207 mRNA_2839 0.59 0.6
336,301 + 11207 mRNA_2839 0.63 -1.1
336,677 + 11207 mRNA_2839 0.72 -0.3
336,824 + 11207 mRNA_2839 0.75 0.9
337,100 - 11207 mRNA_2839 0.82 -0.1
337,360 + 11207 mRNA_2839 0.89 -0.6
337,391 - 11207 mRNA_2839 0.89 -0.5
337,449 + 0.8
337,557 - 1.2
337,571 - 1.1
337,571 - -0.2
337,577 + -0.8
337,596 + -0.3
337,779 - 0.9
337,779 - 0.8
337,860 + 0.4
337,883 + -0.4
337,897 - -0.1
338,013 - -1.1
338,188 + -0.6
338,204 + 1.3
338,214 + -0.6