Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2781

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2780: 11148 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 194102 to 194966 11148 mRNA_2781: 11149 - K09506 DNAJA5 DnaJ homolog subfamily A member 5, at 195140 to 197521 11149

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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194,369 - 11148 mRNA_2780 0.31 0.9
194,482 - 11148 mRNA_2780 0.44 0.2
194,582 - 11148 mRNA_2780 0.55 1.0
194,599 + 11148 mRNA_2780 0.57 0.7
194,602 - 11148 mRNA_2780 0.58 -0.5
194,770 - 11148 mRNA_2780 0.77 0.0
194,880 + 0.2
194,919 - -0.4
194,924 - 1.3
194,925 + -0.4
194,926 + 0.4
195,071 + -0.1
195,200 - -0.9
195,228 + 1.2
195,345 + 0.3
195,661 - 11149 mRNA_2781 0.22 -0.6
195,759 - 11149 mRNA_2781 0.26 0.6
195,810 + 11149 mRNA_2781 0.28 0.9
195,852 - 11149 mRNA_2781 0.30 1.1
195,891 + 11149 mRNA_2781 0.32 0.6
196,381 - 11149 mRNA_2781 0.52 -1.8
196,624 + 11149 mRNA_2781 0.62 0.2
196,652 + 11149 mRNA_2781 0.63 -2.1
196,949 + 11149 mRNA_2781 0.76 -0.2
197,083 + 11149 mRNA_2781 0.82 0.0
197,086 - 11149 mRNA_2781 0.82 0.5
197,397 - 0.4
197,514 - 0.4
197,547 - 1.4
197,553 - -1.1
197,581 + 0.1
197,609 - -0.5
197,660 - -0.7
197,676 + 0.1
197,679 + 1.1
197,687 - -1.2
197,702 + -1.9
197,721 - -0.9
197,721 + 0.0
197,746 - -0.8
197,823 + 0.2
197,828 - -1.0
197,960 - -0.1
197,971 - -1.0
197,975 - -0.5
197,976 - -0.1
197,982 + -0.2
197,986 - 0.2
197,988 - 1.6
197,990 - -0.2
198,009 + -0.9
198,010 + -0.1
198,019 - 1.3
198,023 + -0.2
198,025 - 0.7
198,139 + -0.1
198,151 + 0.1
198,159 - -0.1
198,306 - -0.5
198,310 - 0.3
198,321 + -1.2
198,331 - 0.3
198,337 + -0.7
198,468 + 1.1
198,491 + 0.4
198,510 + -0.2