Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2762

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2761: 11129 - K00031 IDH1, IDH2, icd isocitrate dehydrogenase, at 157082 to 158929 11129 mRNA_2762: 11130 - BLAST Protein pof8 [Termitomyces sp. J132], at 159161 to 161620 11130 mRNA_2763: 11131 - Hypothetical Protein, at 161913 to 163067 11131

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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158,342 - 11129 mRNA_2761 0.68 0.5
158,404 + 11129 mRNA_2761 0.72 0.0
158,418 + 11129 mRNA_2761 0.72 1.0
158,418 + 11129 mRNA_2761 0.72 -0.0
158,473 - 11129 mRNA_2761 0.75 1.1
158,800 - -0.6
158,978 + -0.7
159,108 - 0.3
159,110 - -0.4
159,546 + 11130 mRNA_2762 0.16 0.7
159,692 - 11130 mRNA_2762 0.22 -0.1
159,823 + 11130 mRNA_2762 0.27 -0.1
159,994 - 11130 mRNA_2762 0.34 0.0
160,389 - 11130 mRNA_2762 0.50 0.1
160,409 + 11130 mRNA_2762 0.51 0.8
160,554 - 11130 mRNA_2762 0.57 1.6
160,566 + 11130 mRNA_2762 0.57 -0.8
160,690 - 11130 mRNA_2762 0.62 0.1
161,157 - 11130 mRNA_2762 0.81 0.5
161,157 - 11130 mRNA_2762 0.81 -0.6
161,282 + 11130 mRNA_2762 0.86 -0.1
161,559 - 0.7
161,566 + 0.5
161,570 - 0.4
161,704 + 1.4
161,709 + -0.1
161,832 - 0.2
161,859 - 0.8
161,860 + 0.1
161,871 + 0.0
161,883 + -1.8
161,994 - 0.1
162,003 + -0.7
162,009 + 0.2
162,017 - -0.6
162,151 - 11131 mRNA_2763 0.21 -1.9
162,161 + 11131 mRNA_2763 0.21 -1.0
162,162 - 11131 mRNA_2763 0.22 0.0
162,162 - 11131 mRNA_2763 0.22 -0.9
162,193 + 11131 mRNA_2763 0.24 0.3
162,195 - 11131 mRNA_2763 0.24 -0.5