Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2754

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2753: 11121 - HMMPfam-F-box-like-PF12937, at 139767 to 141011 11121 mRNA_2754: 11122 - SUPERFAMILY--SSF50249, at 141143 to 143248 11122 mRNA_2755: 11123 - K20247 EGT2 hercynylcysteine sulfoxide lyase, at 143517 to 145999 11123

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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140,231 + 11121 mRNA_2753 0.37 -0.4
140,370 + 11121 mRNA_2753 0.48 -0.5
140,418 - 11121 mRNA_2753 0.52 -0.4
140,520 - 11121 mRNA_2753 0.60 -0.4
140,679 - 11121 mRNA_2753 0.73 -0.3
140,761 - 11121 mRNA_2753 0.80 -0.2
140,980 + 0.1
141,556 + 11122 mRNA_2754 0.20 1.4
141,656 + 11122 mRNA_2754 0.24 0.2
141,658 - 11122 mRNA_2754 0.24 0.6
141,673 - 11122 mRNA_2754 0.25 -0.1
141,886 - 11122 mRNA_2754 0.35 -0.4
141,967 - 11122 mRNA_2754 0.39 0.7
141,975 + 11122 mRNA_2754 0.40 -1.3
142,036 + 11122 mRNA_2754 0.42 -0.2
142,055 + 11122 mRNA_2754 0.43 0.5
142,058 - 11122 mRNA_2754 0.43 -0.2
142,127 - 11122 mRNA_2754 0.47 -0.1
142,176 - 11122 mRNA_2754 0.49 0.0
142,423 - 11122 mRNA_2754 0.61 0.7
142,882 - 11122 mRNA_2754 0.83 0.5
142,993 - 11122 mRNA_2754 0.88 -0.4
143,013 - 11122 mRNA_2754 0.89 1.0
143,024 + 11122 mRNA_2754 0.89 0.5
143,161 - -0.1
143,170 - 0.6
143,238 + -0.3
143,324 + -2.4
143,340 - 0.0
143,466 - 0.0
143,482 + -0.2
143,809 + 11123 mRNA_2755 0.12 -2.2
143,997 + 11123 mRNA_2755 0.19 -0.7
144,167 + 11123 mRNA_2755 0.26 1.4
144,167 + 11123 mRNA_2755 0.26 -1.2