Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2702

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2701: 11069 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 37743 to 40782 11069 mRNA_2702: 11070 - BLAST TRAF-like [Xanthophyllomyces dendrorhous], at 41116 to 42334 11070 mRNA_2703: 11071 - Hypothetical Protein, at 42633 to 43267 11071

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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40,982 + 0.1
41,019 + -0.5
41,025 + 0.2
41,027 - 0.3
41,034 - 0.6
41,056 - 0.2
41,082 - -0.3
41,198 + 0.2
41,316 + 11070 mRNA_2702 0.16 0.2
41,582 - 11070 mRNA_2702 0.38 -0.1
41,677 + 11070 mRNA_2702 0.46 -0.0
41,716 + 11070 mRNA_2702 0.49 0.5
41,746 - 11070 mRNA_2702 0.52 0.6
41,800 - 11070 mRNA_2702 0.56 0.5
41,909 + 11070 mRNA_2702 0.65 0.0
41,912 - 11070 mRNA_2702 0.65 0.1
41,925 + 11070 mRNA_2702 0.66 1.0
42,073 - 11070 mRNA_2702 0.79 -1.2
42,181 + 11070 mRNA_2702 0.87 -1.8
42,240 + -0.6
42,267 + -1.7
42,267 - -0.1
42,267 - -0.1
42,377 - 0.6
42,466 - -0.4
42,566 - -0.9
42,617 - -0.1
42,669 + 0.6
42,952 + 11071 mRNA_2703 0.50 0.7
42,953 + 11071 mRNA_2703 0.50 -0.2
42,958 + 11071 mRNA_2703 0.51 0.4
42,964 - 11071 mRNA_2703 0.52 0.1
42,968 - 11071 mRNA_2703 0.53 1.1
43,098 - 11071 mRNA_2703 0.73 -0.2
43,130 - 11071 mRNA_2703 0.78 1.1
43,249 + -1.5
43,249 - -1.0