Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2634

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2633: 11001 - HMMPfam-Nucleotidyl transferase-PF00483,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF56112,SUPERFAMILY--SSF56784, at 638578 to 641420 11001 mRNA_2634: 11002 - KOG2234 Predicted UDP-galactose transporter, at 641734 to 644523 11002 mRNA_2635: 11003 - KOG2615 Permease of the major facilitator superfamily, at 644639 to 646229 11003

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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640,846 + 11001 mRNA_2633 0.80 -0.6
640,893 - 11001 mRNA_2633 0.81 -0.9
640,920 + 11001 mRNA_2633 0.82 0.1
641,032 + 11001 mRNA_2633 0.86 0.2
641,184 - -0.5
641,199 - 1.0
641,230 + -0.3
641,310 + -0.7
641,318 - -1.0
641,339 - -0.7
641,353 + 0.5
641,515 + -2.3
641,541 - -1.1
641,544 + 0.4
641,633 + -0.4
641,638 - 0.1
641,639 + 2.0
641,639 + -0.3
641,646 + -0.5
641,664 - -0.1
641,665 - 1.1
641,666 + -0.1
641,826 + -0.6
641,947 - -0.1
641,974 + 0.6
642,508 - 11002 mRNA_2634 0.28 0.5
642,707 + 11002 mRNA_2634 0.35 0.1
642,726 - 11002 mRNA_2634 0.36 -0.2
642,745 + 11002 mRNA_2634 0.36 0.0
642,745 + 11002 mRNA_2634 0.36 -0.1
642,864 - 11002 mRNA_2634 0.41 -0.0
642,881 + 11002 mRNA_2634 0.41 -0.4
643,005 - 11002 mRNA_2634 0.46 -1.0
643,022 - 11002 mRNA_2634 0.46 -0.2
643,035 + 11002 mRNA_2634 0.47 -0.8
643,329 - 11002 mRNA_2634 0.57 0.0
643,518 - 11002 mRNA_2634 0.64 -0.6
643,704 - 11002 mRNA_2634 0.71 1.1
643,713 + 11002 mRNA_2634 0.71 -2.3
643,725 + 11002 mRNA_2634 0.71 1.2
643,793 - 11002 mRNA_2634 0.74 -0.9
644,056 - 11002 mRNA_2634 0.83 1.2
644,060 - 11002 mRNA_2634 0.83 -1.1
644,152 + 11002 mRNA_2634 0.87 0.3
644,175 - 11002 mRNA_2634 0.87 -0.0
644,226 + 11002 mRNA_2634 0.89 -0.0
644,433 - -0.0
644,733 + 0.4
644,761 + -0.3
644,894 + 11003 mRNA_2635 0.16 -1.1
645,042 - 11003 mRNA_2635 0.25 0.1
645,054 + 11003 mRNA_2635 0.26 0.3
645,119 - 11003 mRNA_2635 0.30 -0.5
645,182 - 11003 mRNA_2635 0.34 -0.3
645,317 - 11003 mRNA_2635 0.43 1.3
645,317 + 11003 mRNA_2635 0.43 1.4
645,384 + 11003 mRNA_2635 0.47 0.1
645,394 + 11003 mRNA_2635 0.47 -0.5
645,474 - 11003 mRNA_2635 0.52 0.7