Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2622

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2621: 10989 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 611391 to 613373 10989 mRNA_2622: 10990 - BLAST expressed protein [Schizophyllum commune H4-8], at 613719 to 614794 10990 mRNA_2623: 10991 - K00306 PIPOX sarcosine oxidase / L-pipecolate oxidase, at 615105 to 616887 10991

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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612,757 - 10989 mRNA_2621 0.69 1.2
612,769 - 10989 mRNA_2621 0.69 0.2
612,773 - 10989 mRNA_2621 0.70 0.5
613,053 - 10989 mRNA_2621 0.84 -0.3
613,083 + 10989 mRNA_2621 0.85 0.4
613,213 - 0.3
613,369 - 1.2
613,463 - 0.4
613,465 - 0.6
613,466 + 0.1
613,480 - -0.8
613,514 + 0.3
613,514 - -1.3
613,516 - 0.2
613,521 + -1.0
613,530 + 1.2
613,658 + -0.8
613,788 - 0.8
613,865 + 10990 mRNA_2622 0.14 0.7
613,946 - 10990 mRNA_2622 0.21 -0.5
614,053 + 10990 mRNA_2622 0.31 -0.2
614,539 - 10990 mRNA_2622 0.76 0.2
614,679 - 10990 mRNA_2622 0.89 0.2
614,828 + -1.1
614,845 + 1.2
614,968 - -0.8
615,035 + -0.4
615,040 + -1.8
615,141 + -0.6
615,147 - -0.0
615,158 + 0.3
615,160 - 0.4
615,166 - -0.4
615,174 + -1.0
615,313 - 10991 mRNA_2623 0.12 -0.4
615,351 + 10991 mRNA_2623 0.14 0.0
615,470 + 10991 mRNA_2623 0.20 -1.2
615,479 - 10991 mRNA_2623 0.21 -0.5
615,739 - 10991 mRNA_2623 0.36 0.4
615,764 + 10991 mRNA_2623 0.37 0.8
615,766 + 10991 mRNA_2623 0.37 0.7