Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2580

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2579: 10947 - K10597 UBE4B, UFD2 ubiquitin conjugation factor E4 B, at 486195 to 490612 10947 mRNA_2580: 10948 - SUPERFAMILY--SSF52266, at 490712 to 492348 10948 mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492942 to 494422 10949

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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489,796 + 10947 mRNA_2579 0.82 -0.4
490,158 + 10947 mRNA_2579 0.90 -1.5
490,216 - 0.6
490,720 - -0.6
490,732 - -1.3
490,734 + -0.1
490,737 - 0.1
490,749 + 0.5
490,750 + -0.9
490,753 - -0.7
490,824 - 0.0
490,845 + 0.4
491,121 - 10948 mRNA_2580 0.25 1.0
491,194 - 10948 mRNA_2580 0.29 0.8
491,387 - 10948 mRNA_2580 0.41 1.1
491,425 - 10948 mRNA_2580 0.44 -0.1
491,501 - 10948 mRNA_2580 0.48 -0.2
491,582 + 10948 mRNA_2580 0.53 -1.4
491,833 - 10948 mRNA_2580 0.68 0.1
491,849 - 10948 mRNA_2580 0.69 0.2
491,855 + 10948 mRNA_2580 0.70 0.2
492,042 + 10948 mRNA_2580 0.81 -0.1
492,146 - 10948 mRNA_2580 0.88 -2.3
492,187 - -0.8
492,204 - -0.5
492,286 - 1.0
492,300 - 0.9
492,595 + 0.8
492,607 + -0.4
492,609 - -0.4
492,614 + 0.5
492,630 + 0.0
492,657 - -1.5
492,672 - 0.7
492,729 + 0.4
492,762 + -0.6
492,766 - 1.4
492,772 + -0.6
492,775 - -1.0
492,781 - -0.6
492,784 + 0.3
492,799 - 0.7
492,807 + -0.8
492,851 - -0.4
492,930 + -0.1