Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2579

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2578: 10946 - KOG3574 Acetyl-CoA transporter, at 483636 to 486060 10946 mRNA_2579: 10947 - K10597 UBE4B, UFD2 ubiquitin conjugation factor E4 B, at 486195 to 490612 10947 mRNA_2580: 10948 - SUPERFAMILY--SSF52266, at 490712 to 492348 10948

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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485,834 + 0.7
485,845 + 0.5
485,862 - 0.5
485,987 - -0.2
485,992 + 1.4
486,000 + 1.3
486,000 + -0.1
486,117 - 0.7
486,121 + 0.1
486,124 - 1.2
486,151 - 0.3
486,194 - -1.3
486,431 - -0.3
486,604 + 0.7
486,693 + 10947 mRNA_2579 0.11 0.4
486,765 + 10947 mRNA_2579 0.13 -0.0
487,035 - 10947 mRNA_2579 0.19 1.1
487,158 + 10947 mRNA_2579 0.22 -0.6
487,432 + 10947 mRNA_2579 0.28 0.7
487,781 - 10947 mRNA_2579 0.36 -0.5
487,858 + 10947 mRNA_2579 0.38 -0.9
488,060 + 10947 mRNA_2579 0.42 -0.2
488,581 - 10947 mRNA_2579 0.54 -1.3
489,231 - 10947 mRNA_2579 0.69 0.3
489,320 + 10947 mRNA_2579 0.71 0.8
489,410 + 10947 mRNA_2579 0.73 1.2
489,508 + 10947 mRNA_2579 0.75 -1.3
489,519 - 10947 mRNA_2579 0.75 0.3
489,529 + 10947 mRNA_2579 0.75 -0.4
489,686 + 10947 mRNA_2579 0.79 0.5
489,796 + 10947 mRNA_2579 0.82 -0.4
490,158 + 10947 mRNA_2579 0.90 -1.5
490,216 - 0.6
490,720 - -0.6
490,732 - -1.3
490,734 + -0.1
490,737 - 0.1
490,749 + 0.5
490,750 + -0.9
490,753 - -0.7
490,824 - 0.0
490,845 + 0.4
491,121 - 10948 mRNA_2580 0.25 1.0
491,194 - 10948 mRNA_2580 0.29 0.8
491,387 - 10948 mRNA_2580 0.41 1.1
491,425 - 10948 mRNA_2580 0.44 -0.1
491,501 - 10948 mRNA_2580 0.48 -0.2
491,582 + 10948 mRNA_2580 0.53 -1.4