Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2533

Experiments: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2532: 10900 - KOG2961 Predicted hydrolase (HAD superfamily), at 375571 to 377208 10900 mRNA_2533: 10901 - K10706 SETX, ALS4 senataxin, at 377456 to 384141 10901 mRNA_2534: 10902 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 384523 to 387549 10902

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
376,774 + 10900 mRNA_2532 0.73 0.2
376,809 + 10900 mRNA_2532 0.76 -1.3
377,103 + -0.3
377,194 - -0.4
377,214 + -0.4
377,248 - 1.5
377,275 - -0.7
377,475 - -1.5
377,549 - 0.7
377,569 + 0.3
377,841 - -0.8
377,960 - -1.5
378,173 + 10901 mRNA_2533 0.11 0.9
378,387 + 10901 mRNA_2533 0.14 -1.6
378,910 + 10901 mRNA_2533 0.22 0.7
379,323 + 10901 mRNA_2533 0.28 1.3
379,554 + 10901 mRNA_2533 0.31 -1.8
379,886 + 10901 mRNA_2533 0.36 0.2
380,269 + 10901 mRNA_2533 0.42 0.4
380,382 + 10901 mRNA_2533 0.44 -1.8
380,886 + 10901 mRNA_2533 0.51 0.3
381,339 - 10901 mRNA_2533 0.58 0.5
381,400 - 10901 mRNA_2533 0.59 0.2
381,516 + 10901 mRNA_2533 0.61 0.2
381,786 - 10901 mRNA_2533 0.65 -0.3
382,344 + 10901 mRNA_2533 0.73 -1.0
382,569 - 10901 mRNA_2533 0.76 0.3
382,622 + 10901 mRNA_2533 0.77 -0.8
382,795 - 10901 mRNA_2533 0.80 -0.7
383,041 - 10901 mRNA_2533 0.84 0.1
383,205 + 10901 mRNA_2533 0.86 0.5
383,234 - 10901 mRNA_2533 0.86 0.5
383,639 - 1.0
383,775 + 0.0
383,796 + -1.3
384,097 - -1.3
384,218 - 1.2
384,234 - 0.4
384,238 + 0.9
384,340 - -0.3
384,379 - -0.1
384,383 - -1.8
384,392 + -1.2
384,441 + -1.3
384,530 - 1.0
384,549 + -0.2
384,865 - 10902 mRNA_2534 0.11 -0.7
385,004 + 10902 mRNA_2534 0.16 -0.4
385,093 - 10902 mRNA_2534 0.19 -0.7