Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2506

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2505: 10873 - KOG3299 Uncharacterized conserved protein, at 311631 to 312608 10873 mRNA_2506: 10874 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 312607 to 314311 10874 mRNA_2507: 10875 - K11232 YPD1 osomolarity two-component system, phosphorelay intermediate protein YPD1, at 314960 to 315808 10875

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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311,620 - -0.4
311,769 + 10873 mRNA_2505 0.14 1.4
312,350 - 10873 mRNA_2505 0.74 0.1
312,469 + 10873 mRNA_2505 0.86 0.8
312,584 - 1.2
312,605 - 0.8
312,607 + 0.2
312,636 + 0.0
312,640 - 0.2
312,778 + 10874 mRNA_2506 0.10 -0.1
312,784 + 10874 mRNA_2506 0.10 -0.2
312,784 - 10874 mRNA_2506 0.10 -0.7
312,791 + 10874 mRNA_2506 0.11 -1.7
313,047 - 10874 mRNA_2506 0.26 -1.1
313,071 - 10874 mRNA_2506 0.27 0.4
313,083 - 10874 mRNA_2506 0.28 0.2
313,245 - 10874 mRNA_2506 0.37 0.3
313,333 - 10874 mRNA_2506 0.43 -0.3
313,363 - 10874 mRNA_2506 0.44 0.3
313,381 + 10874 mRNA_2506 0.45 -0.1
313,388 + 10874 mRNA_2506 0.46 -1.4
313,409 + 10874 mRNA_2506 0.47 -0.4
313,525 + 10874 mRNA_2506 0.54 -0.2
313,526 - 10874 mRNA_2506 0.54 -0.8
313,671 + 10874 mRNA_2506 0.62 0.2
313,845 + 10874 mRNA_2506 0.73 -0.4
313,849 - 10874 mRNA_2506 0.73 0.3
313,873 + 10874 mRNA_2506 0.74 0.8
313,944 + 10874 mRNA_2506 0.78 -0.9
314,005 + 10874 mRNA_2506 0.82 -0.1
314,092 - 10874 mRNA_2506 0.87 0.0
314,098 - 10874 mRNA_2506 0.87 -0.3
314,119 - 10874 mRNA_2506 0.89 -0.8
314,124 - 10874 mRNA_2506 0.89 -1.2
314,250 - 1.1
314,256 - 0.4
314,272 + 0.0
314,339 + -1.5
314,380 - -0.1
314,391 + -0.1
314,394 + -0.6
314,496 + -0.2
314,509 + -0.6
314,520 - -1.1
314,536 - 0.1
314,541 - 0.1
314,541 - -0.4
314,546 - -0.2
314,546 - 0.7
314,546 + 0.4
314,550 + -1.1
314,553 - 0.2
314,617 + -1.5
314,673 - -0.4
314,674 + -0.2
314,679 + -0.4
314,685 - -0.4
314,689 + -0.1
314,696 + -1.2
314,708 + -0.8
314,723 + -1.1
314,739 + -0.6