Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2493

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2492: 10860 - HMMPfam-Rsm1-like-PF08600, at 277761 to 278480 10860 mRNA_2493: 10861 - KOG3098 Uncharacterized conserved protein, at 279372 to 281338 10861 mRNA_2494: 10862 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 281884 to 283232 10862

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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278,567 + -0.2
278,808 - -0.2
278,987 + -0.3
279,102 - -2.3
279,104 - -1.2
279,258 - -0.6
279,283 + 0.2
279,386 - -0.2
279,397 - -0.2
279,406 + -1.7
279,409 - 0.9
279,556 + -1.0
279,581 + 10861 mRNA_2493 0.11 1.3
279,589 - 10861 mRNA_2493 0.11 -0.5
279,826 - 10861 mRNA_2493 0.23 0.5
279,853 + 10861 mRNA_2493 0.24 0.0
279,858 + 10861 mRNA_2493 0.25 -0.1
279,980 - 10861 mRNA_2493 0.31 -0.8
280,001 - 10861 mRNA_2493 0.32 -0.8
280,135 - 10861 mRNA_2493 0.39 -1.2
280,418 - 10861 mRNA_2493 0.53 -0.1
280,552 + 10861 mRNA_2493 0.60 0.2
280,686 + 10861 mRNA_2493 0.67 -0.1
280,689 - 10861 mRNA_2493 0.67 -0.0
280,690 - 10861 mRNA_2493 0.67 1.5
280,709 + 10861 mRNA_2493 0.68 -0.7
280,728 - 10861 mRNA_2493 0.69 0.6
280,729 + 10861 mRNA_2493 0.69 -1.6
280,764 + 10861 mRNA_2493 0.71 -0.4
280,869 - 10861 mRNA_2493 0.76 1.0
280,870 - 10861 mRNA_2493 0.76 0.2
280,881 + 10861 mRNA_2493 0.77 -0.2
281,145 + 0.4
281,184 + 0.9
281,300 - -0.3
281,350 - 0.4
281,457 + 0.5
281,461 + 0.7
281,472 - -0.4
281,596 - -0.1
281,599 - -0.9
281,602 + -0.9
281,603 - -1.1
281,610 + 1.6
281,623 - 0.1
281,627 + 0.5
281,635 - 0.9
281,772 - -0.5
281,792 + -0.2
282,024 - 10862 mRNA_2494 0.10 -0.7
282,035 - 10862 mRNA_2494 0.11 0.6
282,052 + 10862 mRNA_2494 0.12 0.2
282,207 + 10862 mRNA_2494 0.24 0.9