Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2473

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2472: 10840 - K07836 RAP1B Ras-related protein Rap-1B, at 228685 to 229666 10840 mRNA_2473: 10841 - K01610 E4.1.1.49, pckA phosphoenolpyruvate carboxykinase (ATP), at 230136 to 233558 10841 mRNA_2474: 10842 - KOG0603 Ribosomal protein S6 kinase, at 234258 to 235956 10842

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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229,652 - 0.4
229,657 + 1.1
229,804 + -0.3
230,109 + 0.0
230,544 + 10841 mRNA_2473 0.12 -2.1
231,249 + 10841 mRNA_2473 0.33 -0.2
231,260 - 10841 mRNA_2473 0.33 -1.0
231,261 + 10841 mRNA_2473 0.33 -0.4
231,421 + 10841 mRNA_2473 0.38 -0.4
231,527 - 10841 mRNA_2473 0.41 -0.0
231,546 + 10841 mRNA_2473 0.41 0.2
231,688 - 10841 mRNA_2473 0.45 -0.3
232,271 - 10841 mRNA_2473 0.62 0.0
232,275 + 10841 mRNA_2473 0.62 -1.7
232,424 + 10841 mRNA_2473 0.67 0.2
232,426 + 10841 mRNA_2473 0.67 0.3
232,585 + 10841 mRNA_2473 0.72 -0.4
232,718 - 10841 mRNA_2473 0.75 0.3
232,871 - 10841 mRNA_2473 0.80 1.0
233,026 - 10841 mRNA_2473 0.84 -1.3
233,026 - 10841 mRNA_2473 0.84 1.2
233,030 + 10841 mRNA_2473 0.85 0.1
233,044 - 10841 mRNA_2473 0.85 -0.0
233,049 - 10841 mRNA_2473 0.85 -0.1
233,050 - 10841 mRNA_2473 0.85 -0.4
233,053 + 10841 mRNA_2473 0.85 -0.9
233,056 + 10841 mRNA_2473 0.85 -0.3
233,058 + 10841 mRNA_2473 0.85 -0.4
233,058 + 10841 mRNA_2473 0.85 1.0
233,061 + 10841 mRNA_2473 0.85 -0.8
233,062 + 10841 mRNA_2473 0.85 -0.4
233,067 + 10841 mRNA_2473 0.86 -0.4
233,089 - 10841 mRNA_2473 0.86 -0.7
233,199 - 10841 mRNA_2473 0.89 1.0
233,206 - 10841 mRNA_2473 0.90 0.4
233,209 - 10841 mRNA_2473 0.90 -0.2
233,213 + 10841 mRNA_2473 0.90 0.9
233,224 + 0.7
233,226 - -0.6
233,234 + 2.3
233,235 - 0.3
233,235 + -0.7
233,236 + -0.4
233,236 + -0.9
233,240 - 1.0
233,242 + -0.4
233,245 - -0.5
233,247 + -0.4
233,248 + 0.7
233,249 - 0.3
233,252 - -0.3
233,257 + -0.1
233,258 + -0.2
233,258 - -0.1
233,258 + 0.1
233,260 + -0.1
233,303 - -1.4
233,304 + -0.9
233,304 + 1.4
233,309 + -1.6
233,309 + -1.5
233,312 + -0.4
233,318 - 0.0
233,324 - 1.9
233,325 - 1.8
233,327 + -0.3
233,330 - -1.2
233,331 - 1.4
233,331 - -0.8
233,334 + -0.8
233,338 - 0.3
233,340 + -0.5
233,346 - 1.3
233,347 + -0.6
233,349 + -0.3
233,353 + 0.5
233,356 + -0.0
233,356 - -0.5
233,359 - 0.3
233,360 - 0.1
233,361 - -0.3
233,370 - -1.4
233,374 + -0.6
233,385 + 0.6
233,386 - -0.6
233,485 - 0.1
233,502 - 0.1
233,508 + -0.7
233,513 + -0.7
233,514 - 0.6
233,639 + 0.2
233,830 + -1.1
233,860 - -1.4
233,926 + -0.9
233,950 - 0.5
233,966 + 0.3
234,238 + -0.5